Solanum tuberosum (SolTub_3.0)
Description

WD-40 repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005186]

Location
About this transcript

This transcript has 16 exons and is annotated with 34 domains and features.

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-PGSC0003DMT4000132921942514aa
 
Protein coding
M1A2M3 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........caacccacttaataggcccacgaatgacaaaattggagaactgcgcaacg
1PGSC0003DMT400013292.exon147,300,05747,300,211-2155
GTTCTGGCGAATTTCAGTTCATGGACAAAACCCTTACATCTCTCTGTGTATGTATTTTTG
TTCGTGATTATACTCTCAAAAGCAGGGCTTAGCTACGGGATTTTAAGCTCTCACTCTTAA
CAAATGTCTTCTACACTCGAAATCGAAGCTCGAGA                         
 Intron 1-247,300,21247,301,2941,083
gtaagcttcttctctgtctctctag..........atgatgttatctttcttttttgtag
2PGSC0003DMT400013292.exon247,301,29547,301,50520211
TGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGAC
ATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACCTTTATAGC
TGATATTAATAGTGGAAGATGGGATGCAGTACTACCTCAAGTTGCACAACTTAAGCTTCC
TAGAAAGATACTGGAGGATTTATATGAGCAG                             
 Intron 2-347,301,50647,303,1151,610
gtttgcacctcttcattgtttcaaa..........ccttactctttcctttatctgatag
3PGSC0003DMT400013292.exon347,303,11647,303,26800153
ATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAA
ACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCAT
CTACTAGTCCGGACTTACTTCGATCCTCATGAG                           
 Intron 3-447,303,26947,303,675407
gttagaatcattctcaaaaaaaaga..........ttgcctgcaaatgttatatgtgcag
4PGSC0003DMT400013292.exon447,303,67647,303,7240149
GCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAG           
 Intron 4-547,303,72547,304,506782
gttgccaaaatcccactttgctcag..........atatatcttctttggatgcatgcag
5PGSC0003DMT400013292.exon547,304,50747,304,5901184
CACTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCTTAATGGCTTTGATTGGTCAAG
CCTTAAAATGGCAACAGCATCAAG                                    
 Intron 5-647,304,59147,304,746156
gtgagatatattattttcatcactg..........tcatgtatccgacaacacttttcag
6PGSC0003DMT400013292.exon647,304,74747,304,85010104
GTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAG
ATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAG                
 Intron 6-747,304,85147,305,412562
gtttgttggtttacattaaactctt..........ttaagtaatggattttgtgctgcag
7PGSC0003DMT400013292.exon747,305,41347,305,4990087
TTTGGTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTC
TCATGCTCAGTTGATGGATTTATTGAG                                 
 Intron 7-847,305,50047,305,610111
gtatgctaaagctaagtctctcccc..........aatttatttttacattactcaccag
8PGSC0003DMT400013292.exon847,305,61147,305,6640054
GTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGAT      
 Intron 8-947,305,66547,306,210546
gtgagttatacgtttatttcttttc..........tctgacttgctgtatatttatgtag
9PGSC0003DMT400013292.exon947,306,21147,306,3060096
GAAACTTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGACTCGGAG
ATGCTTGCGTCTGGGTCACAAGATGGAAAAATAAAG                        
 Intron 9-1047,306,30747,308,7472,441
gtaaatgtttagtttctattctgct..........gttcttatgttactgtgttttatag
10PGSC0003DMT400013292.exon1047,308,74847,308,87502128
GTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGT
GTCACTAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGC
ACAGCGAG                                                    
 Intron 10-1147,308,87647,309,042167
gtttttttcctttgaccatttactg..........gatatctctgtttcatttgttgtag
11PGSC0003DMT400013292.exon1147,309,04347,309,16920127
AATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCATCTTATGT
GAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTC
AGTGAAG                                                     
 Intron 11-1247,309,17047,309,294125
gtaagattattgtctttcaagtttc..........atttgtctgagttgcctcaaaacag
12PGSC0003DMT400013292.exon1247,309,29547,309,3540060
GTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGG
 Intron 12-1347,309,35547,309,474120
gtattcaacttgcctggggcatata..........tcatttgaattcctttctcttacag
13PGSC0003DMT400013292.exon1347,309,47547,309,58200108
GGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATACTGATCACATTATA
GTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAG            
 Intron 13-1447,309,58347,309,843261
gtaagcattgttgtttgtggatcat..........cttatgctgtgcaattgtcatgtag
14PGSC0003DMT400013292.exon1447,309,84447,309,94402101
GTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCATGTCTA
TCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAG                   
 Intron 14-1547,309,94547,310,364420
gtatgatatgaaatttatgtccctt..........taatgtggtttgtgcatttcaacag
15PGSC0003DMT400013292.exon1547,310,36547,310,4162052
AAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAG        
 Intron 15-1647,310,41747,311,243827
gtaagcttcaactctgacatgaagt..........agttttagtttgtgcattatggcag
16PGSC0003DMT400013292.exon1647,311,24447,311,6160-373
GTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACC
TATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCCTTTGCCATGTTGTC
ACCTTCGTGTAAAAGTGGACTAACATTCTGTATGATTGTTTCTTGGTGCTGACTAGTAAT
ACTTGGTGTTTAGTGTAACGCTATTTTCATAATCAATGTATATTTATCTCTGATATATAT
TTTTTGTTTGAACTTAAGTCTATTCAATCAGATGCCTCATGTAAGTGTCTTTACTAAACC
TTTGGTAGCAAAAGGAGTTTATGCTATGAGTATTAGGTCTTCTTTTTTGTGAGTCTACAA
TAAGCGCGTTATT                                               
3' downstream sequence
cgttattatgtatgtcaaattacacattgattgggggaattgacatgtat..........