Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: PGSC0003DMT400008041

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Description

Bromodomain-containing RNA-binding protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400003108]

Location

Chromosome 1: 82,934,357-82,937,627 reverse strand.

About this transcript

This transcript has 3 exons and is annotated with 34 domains and features.

Gene

This transcript is a product of gene PGSC0003DMG400003108 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	PGSC0003DMT400008041	3080	602aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0ZTY5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	PGSC0003DMT400008040	3269	518aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0ZTY4	-
-	PGSC0003DMT400008039	3163	593aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0ZTY3	-

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Exons

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Download sequence

Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........cacgggcagatctcatcgcctttaagaagcgatgccctctccttctcatt
1	PGSC0003DMT400008039.exon1	82,937,627	82,935,862	-	0	1,766	CCTCGCTCAATCCCTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTAAAGAGTTCCT TTTTTCTTCCTTGTTTGGTTGATTAAAGCCGGAAATTGGAGGTCGGGTGGAGTTTTGTTG GATTCCGGCGGGCGCGTAGCTATCACGTACCTTTTCAATTTCATGATTTCAACACCATCT GATAACGATAAATTCCACCAGAGAAACGCCGGTATTAAGCCTTGCCGGTATAATTTATGG CATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCCGGTG GTGGATTCATGGGGAAAACCCCTTTTTCTCATACACAACTGAACCCTAATCACAACCCTA ACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATTGATGAAT CGCCGGCCGTGACGCAAACAGCGTCTGATGATGCCTATTCGTTCAATCAACGGCCGATTG AATCAACGACCAACGTTGACGGCCTTAATTTCGGAGGATATTTGACTTTTAACGTCGTCT CTTACAACAAAGGCGAGGTCAATGAGCTACGGAGTCGGCTGTTGGCGGAGGTCGAACAGA TCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCAC AAGGCAAATCGAAGAAACTATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAAG ATCCGAAAAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCTGTTGGTGGTG GTGGTGTTAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAA AGCTGATGAAGCATAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCCTGG GTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAA ATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTAAGGCTTACTT TCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGC TTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAG GCGGCAGGAGGGATTATCATCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATAC CTACGCCCGAGAGAGTGAAGAAACCCAAGGCTACTCCAGTCCCTCACATTTCAAAGAGGC AAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCA ATCCACCAGCCCGGCAGCAGTCCCCATTGTCAACTCCTTCCCCAGTGAGGGCACCACCCT CGAAGCCTGAATCAGCTGCTAAAGTTCCTGCTATGGGAAAGCAACCTAAACCGAGGGCCA AGGATCCAAATAAAAGAGAGATGAATATGGAGGAGAAGCATAAATTAGGAGTTGGGTTGC AAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAAC ATTTAGCCCAAGACGGTGACGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTC TATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACTAAGAGGC AGGCATTGATGATTAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCTGCTGCAA CTACATCCGTCGCCGAAGCAGATGGG
	Intron 1-2	82,935,861	82,935,756			106	gtaaatcaatatttcattttatctt..........ctaataaaatgtgtttcttttgcag
2	PGSC0003DMT400008041.exon2	82,935,755	82,935,536	0	1	220	CCTACCACTAGTGAGAAAAATGATTCCTTCAAAAAGCCCAAAAAGGGTGATGTTGGAGAA GAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCAGTGGAAATTGAG AAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTAGTAGTAGCTCTAGT AGTTCTAGCAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG
	Intron 2-3	82,935,535	82,935,451			85	gtatatgctctacttcaaatgcgaa..........taattgaacataatttcttgtgcag
3	PGSC0003DMT400008041.exon3	82,935,450	82,934,357	1	-	1,094	ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAG ATTTGTTGATTCAAGCAGTGCATATGTTGTTGAATTTTCTTTTATCGAGGTATAAAGTTG GGGACTTGAATTCTTTTGTTTTGCACATTCCGGTGAGCTGAGTAATTCGGTTGTTGTAAA CACATGGGCAACCTGACAAGCTAGGAAGAAAAATTGGTCTGCTTATATCACTAGGCAAAT CAAAAAGCTCAGTTGGAAGGGGAAGGGAACTTGTAGTGTTGATGACAAAAGAAGTTATGG CGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAAGAGTGAGA TATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATT TGATTTTTCTTGAAAAGAACACATGACACATTCTACTTCTTTGGTTTCGAGCTCTATCCA ACTTTCTCAAATTGTTTGTGGTACGTACATCTTTAAAGGATATTTTGAGTGAACGTGTTG GTCGGTGAACAACTTGTGGAGCCACTAATTGAGATAACAACTTGGAGTAAAAAGAAAGAT TATCACTGTGGCTAATGTGTTAAAAATTGCTGGCCTGCACTTTGTGTTAGCCATGTCCTA ATCGACCCTAAAATGAGCAAAGACTGTTTATTCAGCTTCCTATTAAGCCACGTTGGAATG GTTTAGTTTGGCCTGAGAGCAGAATATGAAGAAACAAAAAAGCATATATGAATTCAACCC TCTTCTTTTGATGGTGAAGATGTGTTTACAGAGAATGGTATGTGAACAATTTAGGTGCAA TTATTTTCATATACTAAATTTTTTAGGTACTTGTAAATTATTTATTTAATGGGTGGCCTT GTTCCTTTTGCCTTTTTCATTCATTTATAGGTAGGTAGCTCTCAGCTGTGCAGTAACAGT ATAATACTTAAAGAAACTTTCCTTTGTAAAGACGTAAACAATCTCCTTTCACGTGAAGGA TCCAAATATGGCGTCTCAACTAAAATCCACCCATGTGATGGTTATATATATTTTTGGGGA AATATACACAGCCA
	3' downstream sequence						catacattaagtttgcactaatgtagtataagccaaaaattgaatcgacc..........

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