Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: PGSC0003DMT400085749

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Description

F-box/leucine rich repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400035320]

Location

Chromosome 7: 50,249,730-50,251,865 forward strand.

About this transcript

This transcript has 1 exon and is annotated with 11 domains and features.

Gene

This transcript is a product of gene PGSC0003DMG400035320 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	PGSC0003DMT400085749	2136	711aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1DA70	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	11	50	-	cd22159	-
Superfamily	67	443	-	SSF52047	-
PANTHER	352	556	-	PTHR16134	-
Pfam	13	51	COI1, F-box	PF18511	IPR041567 [Display all genes with this domain]
Superfamily	7	48	F-box-like domain superfamily	SSF81383	IPR036047 [Display all genes with this domain]
Gene3D	30	456	Leucine-rich repeat domain superfamily	3.80.10.10	IPR032675 [Display all genes with this domain]
SMART	219	250	Leucine-rich repeat, cysteine-containing subtype	SM00367	IPR006553 [Display all genes with this domain]
SMART	352	377	Leucine-rich repeat, cysteine-containing subtype	SM00367	IPR006553 [Display all genes with this domain]
SMART	378	403	Leucine-rich repeat, cysteine-containing subtype	SM00367	IPR006553 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
Seg	192	202
Alphafold	1	711

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