Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: PGSC0003DMT400071242

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Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027698]

Location

Chromosome 10: 48,607,414-48,608,701 forward strand.

About this transcript

This transcript has 2 exons and is annotated with 11 domains and features.

Gene

This transcript is a product of gene PGSC0003DMG400027698 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	PGSC0003DMT400071239	2227	477aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1CNE4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	PGSC0003DMT400071240	2384	243aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1CNE5	-
-	PGSC0003DMT400071241	2108	243aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1CNE5	-
-	PGSC0003DMT400071242	1198	221aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1CNE7	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	13	218	E3 ubiquitin-protein ligase 1/2	PTHR15860	IPR044235 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	29
MobiDBLite	10	29
MobiDBLite	58	77
MobiDBLite	58	89
MobiDBLite	103	125
MobiDBLite	139	178
Seg	14	29
Seg	78	89
Seg	130	144
Alphafold	1	221

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