Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: PGSC0003DMT400057716

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Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022408]

Location

Chromosome 2: 34,811,169-34,816,859 forward strand.

About this transcript

This transcript has 14 exons and is annotated with 16 domains and features.

Gene

This transcript is a product of gene PGSC0003DMG400022408 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	PGSC0003DMT400057716	1635	442aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1C1I6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	12	409	SWT21/TCAB1 mRNA Splicing and Telomere Maintenance	PTHR13211	IPR051150 [Display all genes with this domain]
SMART	53	95	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	70	95	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	114	161	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	164	207	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	214	258	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	261	301	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	263	301	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	305	347	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	350	389	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Superfamily	57	382	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	57	226	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]
Gene3D	227	435	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	420	442
Seg	105	120
Alphafold	1	442

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