Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Custom tracks

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Transcript: PGSC0003DMT400051031

.

Description

Bromodomain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019814]

Location

Chromosome 9: 38,792,060-38,794,563 reverse strand.

About this transcript

This transcript has 7 exons and is annotated with 10 domains and features.

Gene

This transcript is a product of gene PGSC0003DMG400019814 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
-	PGSC0003DMT400051031	1818	605aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

.

Domains & features

.

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	3	99	-	cd04369	-
SMART	1	104	Bromodomain	SM00297	IPR001487 [Display all genes with this domain]
Pfam	10	89	Bromodomain	PF00439	IPR001487 [Display all genes with this domain]
PROSITE profiles	15	85	Bromodomain	PS50014	IPR001487 [Display all genes with this domain]
Prints	18	31	Bromodomain	PR00503	IPR001487 [Display all genes with this domain]
Prints	32	48	Bromodomain	PR00503	IPR001487 [Display all genes with this domain]
Prints	48	66	Bromodomain	PR00503	IPR001487 [Display all genes with this domain]
Prints	66	85	Bromodomain	PR00503	IPR001487 [Display all genes with this domain]
Gene3D	1	122	Bromodomain-like superfamily	1.20.920.10	IPR036427 [Display all genes with this domain]
Superfamily	3	102	Bromodomain-like superfamily	SSF47370	IPR036427 [Display all genes with this domain]

.

Personal Data