Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: PGSC0003DMT400048526

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Description

Kinase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018850]

Location

Chromosome 3: 38,289,445-38,295,379 reverse strand.

About this transcript

This transcript has 9 exons and is annotated with 23 domains and features.

Gene

This transcript is a product of gene PGSC0003DMG400018850 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	PGSC0003DMT400048527	2948	808aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1BMJ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	PGSC0003DMT400048526	2352	783aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1BMJ4	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	25	152	-	SSF52402	-
CDD	25	176	-	cd01989	-
Gene3D	410	504	-	3.30.200.20	-
Gene3D	505	713	-	1.10.510.10	-
Superfamily	704	782	-	SSF57850	-
CDD	716	770	-	cd16655	-
PROSITE profiles	432	694	Protein kinase domain	PS50011	IPR000719 [Display all genes with this domain]
SMART	432	694	Protein kinase domain	SM00220	IPR000719 [Display all genes with this domain]
PROSITE patterns	438	459	Protein kinase, ATP binding site	PS00107	IPR017441 [Display all genes with this domain]
Superfamily	415	687	Protein kinase-like domain superfamily	SSF56112	IPR011009 [Display all genes with this domain]
Gene3D	23	169	Rossmann-like alpha/beta/alpha sandwich fold	3.40.50.620	IPR014729 [Display all genes with this domain]
Pfam	437	687	Serine-threonine/tyrosine-protein kinase, catalytic domain	PF07714	IPR001245 [Display all genes with this domain]
PROSITE patterns	550	562	Serine/threonine-protein kinase, active site	PS00108	IPR008271 [Display all genes with this domain]
PROSITE profiles	714	783	U-box domain	PS51698	IPR003613 [Display all genes with this domain]
Pfam	716	781	U-box domain	PF04564	IPR003613 [Display all genes with this domain]
SMART	718	780	U-box domain	SM00504	IPR003613 [Display all genes with this domain]
PANTHER	24	782	U-box domain-containing ubiquitin ligases	PTHR45647	IPR051348 [Display all genes with this domain]
Gene3D	715	783	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	209	230
Seg	199	233
Seg	379	407
Alphafold	1	783
Ncoils	351	409

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