Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: PGSC0003DMT400048527

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Description

Kinase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018850]

Location

Chromosome 3: 38,289,107-38,296,267 reverse strand.

About this transcript

This transcript has 10 exons and is annotated with 23 domains and features.

Gene

This transcript is a product of gene PGSC0003DMG400018850 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	PGSC0003DMT400048527	2948	808aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1BMJ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	PGSC0003DMT400048526	2352	783aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1BMJ4	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	24	151	-	SSF52402	-
CDD	24	175	-	cd01989	-
Gene3D	435	529	-	3.30.200.20	-
Gene3D	530	738	-	1.10.510.10	-
Superfamily	729	807	-	SSF57850	-
CDD	741	795	-	cd16655	-
PROSITE profiles	457	719	Protein kinase domain	PS50011	IPR000719 [Display all genes with this domain]
SMART	457	719	Protein kinase domain	SM00220	IPR000719 [Display all genes with this domain]
PROSITE patterns	463	484	Protein kinase, ATP binding site	PS00107	IPR017441 [Display all genes with this domain]
Superfamily	440	712	Protein kinase-like domain superfamily	SSF56112	IPR011009 [Display all genes with this domain]
Gene3D	22	168	Rossmann-like alpha/beta/alpha sandwich fold	3.40.50.620	IPR014729 [Display all genes with this domain]
Pfam	462	712	Serine-threonine/tyrosine-protein kinase, catalytic domain	PF07714	IPR001245 [Display all genes with this domain]
PROSITE patterns	575	587	Serine/threonine-protein kinase, active site	PS00108	IPR008271 [Display all genes with this domain]
PROSITE profiles	739	808	U-box domain	PS51698	IPR003613 [Display all genes with this domain]
Pfam	741	806	U-box domain	PF04564	IPR003613 [Display all genes with this domain]
SMART	743	805	U-box domain	SM00504	IPR003613 [Display all genes with this domain]
PANTHER	23	807	U-box domain-containing ubiquitin ligases	PTHR45647	IPR051348 [Display all genes with this domain]
Gene3D	740	808	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
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Feature type	Start	End
MobiDBLite	208	229
Seg	198	232
Seg	404	432
Alphafold	1	808
Ncoils	376	434

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