Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: PGSC0003DMT400043084

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Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400016712]

Location

Chromosome 2: 36,807,897-36,811,222 forward strand.

About this transcript

This transcript has 4 exons and is annotated with 13 domains and features.

Gene

This transcript is a product of gene PGSC0003DMG400016712 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	PGSC0003DMT400043085	1988	211aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1BE20	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	PGSC0003DMT400043084	579	192aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1BE19	-	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	4	176	-	PTHR46364	-
PROSITE profiles	1	116	Bromo adjacent homology (BAH) domain	PS51038	IPR001025 [Display all genes with this domain]
SMART	1	116	Bromo adjacent homology (BAH) domain	SM00439	IPR001025 [Display all genes with this domain]
Pfam	2	113	Bromo adjacent homology (BAH) domain	PF01426	IPR001025 [Display all genes with this domain]
Gene3D	1	114	Bromo adjacent homology (BAH) domain superfamily	2.30.30.490	IPR043151 [Display all genes with this domain]
Superfamily	112	176	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
PROSITE profiles	118	169	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
Pfam	121	166	Zinc finger, PHD-finger	PF00628	IPR019787 [Display all genes with this domain]
SMART	120	167	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
PROSITE patterns	121	166	Zinc finger, PHD-type, conserved site	PS01359	IPR019786 [Display all genes with this domain]
Gene3D	115	177	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type	Start	End
Seg	162	174
Alphafold	1	192

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