Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: PGSC0003DMT400023216

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Description

Ubiquitin-activating enzyme E1c [Source:PGSC_GENE;Acc:PGSC0003DMG400008991]

Location

Chromosome 1: 62,057,235-62,066,719 forward strand.

About this transcript

This transcript has 9 exons and is annotated with 13 domains and features.

Gene

This transcript is a product of gene PGSC0003DMG400008991 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	PGSC0003DMT400023216	1702	448aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1AHZ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	PGSC0003DMT400023217	840	107aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1AHZ5	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	41	341	-	3.40.50.720	-
Gene3D	342	426	-	3.10.290.20	-
SMART	343	434	E2 binding	SM01181	IPR014929 [Display all genes with this domain]
Pfam	344	431	E2 binding	PF08825	IPR014929 [Display all genes with this domain]
CDD	43	338	NEDD8-activating enzyme E1 catalytic subunit, N-terminal domain	cd01488	IPR030468 [Display all genes with this domain]
Pfam	31	335	THIF-type NAD/FAD binding fold	PF00899	IPR000594 [Display all genes with this domain]
PANTHER	42	407	ThiF/MoeB/HesA family	PTHR10953	IPR045886 [Display all genes with this domain]
Gene3D	210	278	Ubiquitin activating enzyme, alpha domain superfamily	1.10.10.520	IPR023318 [Display all genes with this domain]
Superfamily	43	408	Ubiquitin-activating enzyme	SSF69572	IPR035985 [Display all genes with this domain]
PROSITE patterns	208	216	Ubiquitin-activating enzyme E1, Cys active site	PS00865	IPR033127 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
Seg	8	19
Seg	278	293
Alphafold	1	448

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