Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: PGSC0003DMT400017946

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Description

Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006969]

Location

Chromosome 2: 26,641,137-26,643,848 reverse strand.

About this transcript

This transcript has 6 exons and is annotated with 11 domains and features.

Gene

This transcript is a product of gene PGSC0003DMG400006969 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	PGSC0003DMT400017948	1398	394aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1A9S8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	PGSC0003DMT400017947	1420	277aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1A9S7	-	-
-	PGSC0003DMT400017944	1410	155aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1A9S4	-	-
-	PGSC0003DMT400017945	1405	272aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1A9S5	-	-
-	PGSC0003DMT400017946	1321	267aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1A9S6	-	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	135	207	-	SSF57850	-
PANTHER	119	230	RNF168/RNF169 E3 ubiquitin-protein ligase	PTHR23328	IPR051657 [Display all genes with this domain]
SMART	144	182	Zinc finger, RING-type	SM00184	IPR001841 [Display all genes with this domain]
PROSITE profiles	144	183	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
PROSITE patterns	159	168	Zinc finger, RING-type, conserved site	PS00518	IPR017907 [Display all genes with this domain]
Pfam	144	180	Zinc finger, RING-type, eukaryotic	PF13445	IPR027370 [Display all genes with this domain]
Gene3D	91	213	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	49	86
MobiDBLite	215	237
MobiDBLite	221	237
Alphafold	1	267

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