Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: PGSC0003DMT400017568

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Description

Stress-associated protein 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400006813]

Location

Chromosome 1: 66,071,086-66,075,234 forward strand.

About this transcript

This transcript has 3 exons and is annotated with 13 domains and features.

Gene

This transcript is a product of gene PGSC0003DMG400006813 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	PGSC0003DMT400017569	3204	167aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1A938	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	PGSC0003DMT400017568	1080	167aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1A938	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	1	65	-	1.20.5.4770	-
Superfamily	16	54	-	SSF57716	-
Gene3D	85	163	AN1-like Zinc finger	4.10.1110.10	IPR035896 [Display all genes with this domain]
Superfamily	93	162	AN1-like Zinc finger	SSF118310	IPR035896 [Display all genes with this domain]
PANTHER	13	167	AN1/A20 Zinc Finger	PTHR10634	IPR050652 [Display all genes with this domain]
PROSITE profiles	11	45	Zinc finger, A20-type	PS51036	IPR002653 [Display all genes with this domain]
SMART	14	38	Zinc finger, A20-type	SM00259	IPR002653 [Display all genes with this domain]
Pfam	16	38	Zinc finger, A20-type	PF01754	IPR002653 [Display all genes with this domain]
PROSITE profiles	102	148	Zinc finger, AN1-type	PS51039	IPR000058 [Display all genes with this domain]
Pfam	108	144	Zinc finger, AN1-type	PF01428	IPR000058 [Display all genes with this domain]
SMART	108	145	Zinc finger, AN1-type	SM00154	IPR000058 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
Seg	61	73
Alphafold	1	167

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