Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: PGSC0003DMT400011800

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Description

Sentrin/sumo-specific protease [Source:PGSC_GENE;Acc:PGSC0003DMG400004634]

Location

Chromosome 12: 60,196,693-60,201,901 forward strand.

About this transcript

This transcript has 9 exons and is annotated with 8 domains and features.

Gene

This transcript is a product of gene PGSC0003DMG400004634 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	PGSC0003DMT400011800	2183	523aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1A072	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	PGSC0003DMT400011799	1614	485aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1A071	-	-
-	PGSC0003DMT400011798	1560	519aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M1A070	-	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	168	516	-	PTHR12606	-
Gene3D	278	521	-	3.40.395.10	-
Superfamily	288	521	Papain-like cysteine peptidase superfamily	SSF54001	IPR038765 [Display all genes with this domain]
PROSITE profiles	321	493	Ulp1 protease family, C-terminal catalytic domain	PS50600	IPR003653 [Display all genes with this domain]
Pfam	336	516	Ulp1 protease family, C-terminal catalytic domain	PF02902	IPR003653 [Display all genes with this domain]

Other features

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Feature type
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End

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Filter

Feature type	Start	End
Seg	22	43
Seg	346	356
Alphafold	1	523

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