Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Solyc01g088450.2.1

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Location

Chromosome 1: 83,125,933-83,126,856 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 7 domains and features, is associated with 1233 variant alleles and maps to 24 oligo probes.

Gene

This transcript is a product of gene Solyc01g088450.2 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	Solyc01g088450.2.1	690	138aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K4AYN5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........tactttcatatgtgttttctctatcttagccttaggacctcaatagtcaa
1	Solyc01g088450.2.1-E1	83,125,933	83,126,351	-	1	419	TACGGACAACTTACGCAGCGTTTTGGACGTTTCCTTTTAGGAAGCTATGGATTTTCAATT TGAGGTATTGCTCGCCGCCACAACCACCGATTTATTGATTTGCGGCATCAAATTCCGGTG GTTCTGCCGCCCCGACAATCACCTACCACCGCCGTTCACCGACGAAGCCAGATACTGCGC CGTGTGCCTCTACGACGTTATTAGCGGGGAGAATTGCCGGAAACTGCCGAAATGTGGGCA CGTGTTCCACGTGGAGTGCGTGGACGCGTGGCTACAAAGCAATCGGACATGTCCACTCTG CAGAAGGCAAGTTACTGATCAGGGGAGAGGCGAAACCGTAATTTCGCGGGCGGAGGATTT TATTTTGGAAAAGATTTATAATCCTATTACTGAGATAGTCACAGTGCTTGTGTCCGGCG
	Intron 1-2	83,126,352	83,126,585			234	gtatgtctcttgcacatccatgaat..........ttatcatagtgaagtttttttacag
2	Solyc01g088450.2.1-E2	83,126,586	83,126,856	1	-	271	TCAATTGGATGGAGGAGATGTTTCATTTTTCCATTCTTGTGTAAGCTTTGTTCAAAGAAA ATTATACCCTTCCAGATCTCATTCAGTGGATATGTTATTGTTGCTCTTCTATCGAGAAGA TGATCAAAATAGTCCTATATATATACACTGGGCGATTTTGATGCTGTAAATTGTTTCATG GATGAGATAGATCTAGGACTCTAATGGAAATATAGATGTTAGTTGTGTTGGTGATAAAGG GCTGTTTGGTCATAAATTTTTCAAAGAAAAA
	3' downstream sequence						gtttagcaatttattttcattcgtatagtttgttattatttgataatatt..........

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