Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Solyc03g118320.1.1

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Location

Chromosome 3: 68,719,726-68,721,477 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 25 domains and features, is associated with 1383 variant alleles and maps to 27 oligo probes.

Gene

This transcript is a product of gene Solyc03g118320.1 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	Solyc03g118320.1.1	1752	583aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q7GIM0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	2	51	-	1.10.8.10	-
CDD	153	291	-	cd00009	-
Gene3D	298	371	-	1.10.8.60	-
CDD	298	400	-	cd18139	-
Gene3D	400	503	-	1.20.272.10	-
Gene3D	504	581	-	1.10.3710.10	-
PANTHER	3	576	AAA ATPase RarA/MGS1/WRNIP1	PTHR13779	IPR051314 [Display all genes with this domain]
Pfam	326	425	AAA C-terminal domain	PF16193	IPR032423 [Display all genes with this domain]
SMART	173	298	AAA+ ATPase domain	SM00382	IPR003593 [Display all genes with this domain]
Pfam	177	293	ATPase, AAA-type, core	PF00004	IPR003959 [Display all genes with this domain]
Superfamily	410	577	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SSF48019	IPR008921 [Display all genes with this domain]
Pfam	426	573	MgsA AAA+ ATPase C-terminal	PF12002	IPR021886 [Display all genes with this domain]
Gene3D	128	296	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]
Superfamily	136	361	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Superfamily	4	40	UBA-like superfamily	SSF46934	IPR009060 [Display all genes with this domain]
PROSITE profiles	1	37	Ubiquitin-associated domain	PS50030	IPR015940 [Display all genes with this domain]
SMART	4	36	Ubiquitin-associated domain	SM00165	IPR015940 [Display all genes with this domain]
Pfam	4	38	Ubiquitin-associated domain	PF22562	IPR015940 [Display all genes with this domain]

Other features

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Feature type
Start
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Feature type	Start	End
MobiDBLite	123	145
MobiDBLite	366	385
Seg	54	60
Seg	104	113
Seg	356	370
Alphafold	1	583
Ncoils	220	240

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