Solanum lycopersicum (SL3.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 3: 4,597,020-4,597,556 reverse strand.
This transcript has 1 exon, is annotated with 12 domains and features, is associated with 1387 variant alleles and maps to 23 oligo probes.
This transcript is a product of gene Solyc03g032060.1 Show transcript tableHide transcript table
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| Domain source | Start | End | Description | Accession | InterPro |
|---|---|---|---|---|---|
| SMART | 99 | 153 | - | SM01197 | - |
| CDD | 102 | 145 | - | cd16461 | - |
| Superfamily | 102 | 151 | - | SSF57850 | - |
| PANTHER | 20 | 158 | RING-type E3 ubiquitin ligase ATL | PTHR45798 | IPR052788 [Display all genes with this domain] |
| Pfam | 102 | 145 | Zinc finger, RING-type | PF13639 | IPR001841 [Display all genes with this domain] |
| SMART | 103 | 144 | Zinc finger, RING-type | SM00184 | IPR001841 [Display all genes with this domain] |
| PROSITE profiles | 103 | 145 | Zinc finger, RING-type | PS50089 | IPR001841 [Display all genes with this domain] |
| Gene3D | 67 | 149 | Zinc finger, RING/FYVE/PHD-type | 3.30.40.10 | IPR013083 [Display all genes with this domain] |
| Feature type | Start | End |
|---|---|---|
| Seg | 10 | 33 |
| Seg | 68 | 90 |
| TMHMM | 35 | 54 |
| Alphafold | 1 | 178 |
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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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