Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EFJ34420 PUB49-1-201

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Location

SuperContig GL377569: 1,616,484-1,618,931 forward strand.

About this transcript

This transcript has 10 exons and is annotated with 25 domains and features.

Gene

This transcript is a product of gene SELMODRAFT_270432 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
PUB49-1-201	EFJ34420	1959	576aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D8QZK3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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General identifiers

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This transcript corresponds to the following database identifiers:

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External database	Database identifier
European Nucleotide Archive	GL377569 [align] [view all locations]
INSDC protein ID	EFJ34420.1 [align] [view all locations]
RefSeq DNA	XM_002964041.2 [Target %id: 100; Query %id: 100] [align] Selaginella moellendorffii peptidyl-prolyl cis-trans isomerase CYP65 [view all locations] XM_002964437.2 [Target %id: 100; Query %id: 100] [align] Selaginella moellendorffii hydroxyproline O-galactosyltransferase GALT6 [view all locations]
RefSeq DNA predicted	XM_002964041.1 [Target %id: 92; Query %id: 95] [align] ubiquitin-protein ligase, PUB49 (PUB49-1), mRNA [view all locations]
RefSeq mRNA predicted	XM_002964041.2 [Target %id: 92; Query %id: 91] [align] PREDICTED: Selaginella moellendorffii peptidyl-prolyl cis-trans isomerase CYP65 (LOC9655677), mRNA. [view all locations] XM_002975387.2 [Target %id: 92; Query %id: 94] [align] PREDICTED: Selaginella moellendorffii peptidyl-prolyl cis-trans isomerase CYP65 (LOC9629439), mRNA. [view all locations]
RefSeq peptide predicted	XP_002964087.1 [Target %id: 100; Query %id: 100] [align] ubiquitin-protein ligase, PUB49 [view all locations]
UniParc	UPI0001E019FB [view all locations]
UniProt transcript name	PUB49-1-201 [align] [view all locations]
UniProtKB/TrEMBL	D8QZK3.63 [Target %id: 100; Query %id: 100] [align] RING-type E3 ubiquitin transferase [view all locations]

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