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Selaginella moellendorffii (v1.0)
About this transcript

This transcript has 6 exons and is annotated with 19 domains and features.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-EFJ173322238745aa
 
Protein coding
D8SDZ1 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........atcgatttaaagtattcgccgaatattttcctaggttagggctggtggcg
1EFJ17332.exon1879,680880,00202323
ATGGACGCAAGTGATAAGAACTGCGGCTGGGAATGCGGTAAGGCGAATGCGGCGGATGCT
GAGAGACCAGACGGCTCCAATCCATTGTCGGACAGTGCTTGCTCCGGATCCGATGCTTCA
CCACGCCCAGCGGCGGATTCAGGGTTTGTGGCAATCTCCTTGTCTAGCCCGTCATTGGAT
GCTGCTGCTTCGTCGTCAAACAGCGAGAAATTCTCTTCGGAGGAAGTCGCCACGCTTGCT
CGGTGTCTATGTGCTCCTCTCGTCTCGATTCGCGTTGGAAGAATTGTCAGCCATGGCTAC
TTTCTTCGTCCAACAAATTCAAG                                     
 Intron 1-2880,003880,07169
gtatagcgtaagatctttgtgattt..........ctctttctcttttcttttgccgcag
2EFJ17332.exon2880,072880,32120250
GGGTCACCTCGATCTGACGATGCTGCCCAGCTCCGACTTCCGTCTCTCATTCCTGGGCGA
TGATGGGACGATCGAAAGACTGGCTCTAGTTTCTTCGTCACCAATCCAAGGCTCTTTTCC
AGTTGAGCTGCAAGAAATCGCTACGGACTCTTCCGGCAGATCCTTCGTCCTCAAACTCGC
CTCAAACAGATCGGTGTTCTTCTGGCAATCGGAAAAGTCCAAAGCTCGTGGAGATGAGTT
AGTCCTCAAG                                                  
 Intron 2-3880,322880,40483
gtcagtcacatttttcttcatccct..........cgttcgtgcctttgttgtgctacag
3EFJ17332.exon3880,405881,33700933
ATGAAAGATATCTTGCAACAAAGGCCAACCTTGTGTCAGCAGACAGGCATCCACGAGTCG
CGTCTCAAGTCGATCGCCAGCGGCTTGCAAACTTTGCCACCGTCTTCTTCGTACTCGTTT
TCTTCCGGCCCAGAAGCTCTGCTGCCAGGTTCTTTGCCACTTCCAAGTTTGAGCAATCCA
TTTGTTTGTTCGAGTGAAGGAGACGATGCTCCAAGCGCAGTGTGCTCGCAAGCGCTTGCG
GCAGCAGCAATAGGCATGTCCTTTGGCCTCGCCTCGTCGACTTCCACCACTGTTCCTGGC
TCCAGCTCCATCGCCGCGACGCTCTTCTCACTCAACCAGAGCCAGCGGCTGCTGAGAAGC
TCGGGAGAGCTCGACAAGAAGGCTTTCGCGCAGAGAATCCTTGGATCACTCCCACAGACC
TTCGTTCCATTCCCGCTCCTAGTAAGTGGCTCCGTAAGTGTTCCTAGCGTTCCTCTCTCG
GCAGTCGTGGCTCCTTACTACTGCCCATGTCCGCTTGGAGCCGCCTCGGCTTTGCAGTAC
TCGACTTTCACTTCTCACCTTCCATCGCTGGTTTCGTCCTCGGCAGCCGCTTCTTTCGTG
TCAGTCGGGCCGCCACCTCCGCTCCTTCCTCCTCTGGGTTTCTCGCTTCCTCTGGTTTCC
CCGGCCTCGGGCGTTTCTCTGGCCAGCGGACCTCTCATGGGTGTGGTTTTGCCGTGTCCG
CTGAAGCCCGAGTCGCCTAGCACCGGTGTGTTTCAAGGTGGTCTTGCCGATATACTTGGA
GTTTATAGCTCGAGCTTTCTTCCAACGAGTTTGGATCTTGGCAGGAACTTTTCATCGTCT
GGATTGACGAACTTGTATTGTCAGCCAGCTCTCGAGAACAACAGCAGCAGCAGCAGCAGC
GGTGGGATGATTTGGAGCAGCAATCTCTCACAC                           
 Intron 3-4881,338881,862525
gtaagtttcgatcgctctgaaaagt..........attcgaaaggtgtttgaagatgcag
4EFJ17332.exon4881,863881,96400102
GGTGTTAGGAATGCCACCGCCGCAGTGCAGGAGAAGACCGGCAACGCGATGGCCAAGGCC
GGGGAGAAGATGGATTCGGCTAAGGCCTCGGGCACCGAGAAG                  
 Intron 4-5881,965882,159195
gtgagatttcccccctttctttaat..........attcattggtgtggtcttcgttcag
5EFJ17332.exon5882,160882,56801409
GCTGAAAAGGTGACCGCGCACAACAAGGCCGAGAAGCACGAGGCCAAGGAGAGGAAGCAC
ATGAAGGAGGCGGAGGCGGCGGGACACCTCCACGAGAAGCAGGCGGAGAACATCGCCAAG
GCGGAGGAGAAGAAGCACGGGATTGGGCACCACGATACGGGGCTCGGCCACACCACCGGC
ACACACAATCCTCTGTCGACCGGCACCGGTCATACTGGCACGGGGACTCATACTGGCACA
CACACCGGTACACACAACCCCCTGTCGGGCGCCACCGGTCATACTGGCACGGGGACTCAC
ACCGGCACACACAACCCCCTGTCGGCCGCCACCGGCCATACTGGCACGGGCACCCACACC
GGCACCGGCCATACTGGCACGGGAGCTCACGTCCCCGGCACCCACACCG           
 Intron 5-6882,569882,691123
gtactcacaccgggctttgaattga..........aattatctgtatcacgtgggtttag
6EFJ17332.exon6882,692882,91210221
TAATGTTTCCAATTGAGTTAGCTGGGCGACCCGGGTCAGCTGGTCACCGTCGGTCAAAAG
ATTCGGGAAAGACGGCCGTGGTTCATGAGTTGGCAAGACTCTCGATAAACCAAGTGGATG
CCGATCTGGAGAAGGCGCCTTGCAGCGAGTATGTCTATTATTTGGACGGGATCGACGGGA
CTGACTTATCATTCTCCGGTGGAACGATAGAAGTTGGGTAA                   
3' downstream sequence
tcattgcaaacacctatgaacttctctgaatggctacataggtgtttttc..........