Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EFJ25244

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Location

SuperContig GL377587: 1,306,134-1,307,245 forward strand.

About this transcript

This transcript has 5 exons and is annotated with 18 domains and features.

Gene

This transcript is a product of gene SELMODRAFT_99900 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	EFJ25244	732	243aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D8RRH6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	8	241	Alfin	PTHR12321	IPR045104 [Display all genes with this domain]
Pfam	11	136	Alfin, N-terminal	PF12165	IPR021998 [Display all genes with this domain]
CDD	188	238	Alfin1-like, PHD finger	cd15613	IPR044104 [Display all genes with this domain]
Superfamily	178	239	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
PROSITE profiles	186	238	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
Pfam	189	235	Zinc finger, PHD-finger	PF00628	IPR019787 [Display all genes with this domain]
SMART	188	236	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
PROSITE patterns	189	235	Zinc finger, PHD-type, conserved site	PS01359	IPR019786 [Display all genes with this domain]
Gene3D	178	237	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
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Feature type	Start	End
MobiDBLite	139	189
MobiDBLite	146	159
MobiDBLite	172	184
Phobius	1	89
Phobius	90	111
Phobius	112	243
Seg	59	76
Seg	141	159
Seg	172	183

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