Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EFJ27768

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Location

SuperContig GL377581: 2,271,498-2,273,142 forward strand.

About this transcript

This transcript has 8 exons and is annotated with 28 domains and features.

Gene

This transcript is a product of gene SELMODRAFT_451143 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	EFJ27768	1209	297aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D8RJS7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	4	231	-	PTHR43066	-
Gene3D	243	297	-	1.10.8.10	-
Pfam	51	189	Peptidase S54, rhomboid domain	PF01694	IPR022764 [Display all genes with this domain]
Gene3D	9	191	Rhomboid-like superfamily	1.20.1540.10	IPR035952 [Display all genes with this domain]
Superfamily	10	189	Rhomboid-like superfamily	SSF144091	IPR035952 [Display all genes with this domain]
Superfamily	240	295	UBA-like superfamily	SSF46934	IPR009060 [Display all genes with this domain]
PROSITE profiles	255	295	Ubiquitin-associated domain	PS50030	IPR015940 [Display all genes with this domain]
Pfam	257	292	Ubiquitin-associated domain	PF00627	IPR015940 [Display all genes with this domain]
SMART	257	294	Ubiquitin-associated domain	SM00165	IPR015940 [Display all genes with this domain]

Other features

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Feature type
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End

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Feature type	Start	End
Phobius	1	11
Phobius	12	31
Phobius	32	51
Phobius	52	78
Phobius	79	89
Phobius	90	112
Phobius	113	118
Phobius	119	139
Phobius	140	158
Phobius	159	189
Phobius	190	297
Seg	91	110
Seg	165	176
Seg	214	223
Seg	242	257
TMHMM	13	35
TMHMM	55	77
TMHMM	90	112
TMHMM	122	144

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