Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EFJ23746

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Description

General transcription factor IIH subunit [Source:UniProtKB/TrEMBL;Acc:D8RVB4]

Location

SuperContig GL377591: 935,493-937,150 forward strand.

About this transcript

This transcript has 4 exons and is annotated with 17 domains and features.

Gene

This transcript is a product of gene SELMODRAFT_232450 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	EFJ23746	1185	394aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D8RVB4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	2	390	-	PTHR12695	-
Superfamily	316	386	-	SSF57889	-
CDD	61	243	Ssl1-like	cd01453	IPR007198 [Display all genes with this domain]
Pfam	69	259	Ssl1-like	PF04056	IPR007198 [Display all genes with this domain]
SMART	342	387	TFIIH C1-like domain	SM01047	IPR004595 [Display all genes with this domain]
Pfam	343	387	TFIIH C1-like domain	PF07975	IPR004595 [Display all genes with this domain]
PIRSF	1	388	TFIIH subunit Ssl1/p44	PIRSF015919	IPR012170 [Display all genes with this domain]
NCBIFAM	281	386	TFIIH subunit Ssl1/p44	TIGR00622	IPR012170 [Display all genes with this domain]
TIGRFAM	281	386	TFIIH subunit Ssl1/p44	TIGR00622	IPR012170 [Display all genes with this domain]
PROSITE patterns	360	380	Zinc finger C2H2-type	PS00028	IPR013087 [Display all genes with this domain]
Gene3D	319	393	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
Gene3D	59	244	von Willebrand factor A-like domain superfamily	3.40.50.410	IPR036465 [Display all genes with this domain]
Superfamily	61	229	von Willebrand factor A-like domain superfamily	SSF53300	IPR036465 [Display all genes with this domain]
SMART	63	236	von Willebrand factor, type A	SM00327	IPR002035 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
Seg	41	49
Seg	240	252
Alphafold	1	394

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