Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EFJ36027

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Location

SuperContig GL377567: 2,520,892-2,522,214 forward strand.

About this transcript

This transcript has 4 exons and is annotated with 15 domains and features.

Gene

This transcript is a product of gene SELMODRAFT_165588 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	EFJ36027	1090	321aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D8QVB3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	250	288	-	4.10.1060.10	-
PANTHER	7	320	DNA-dependent metalloprotease WSS1-like	PTHR46622	IPR053000 [Display all genes with this domain]
PROSITE profiles	2	205	WLM domain	PS51397	IPR013536 [Display all genes with this domain]
Pfam	11	204	WLM domain	PF08325	IPR013536 [Display all genes with this domain]
PROSITE profiles	255	284	Zinc finger, RanBP2-type	PS50199	IPR001876 [Display all genes with this domain]
SMART	257	281	Zinc finger, RanBP2-type	SM00547	IPR001876 [Display all genes with this domain]
PROSITE patterns	259	278	Zinc finger, RanBP2-type	PS01358	IPR001876 [Display all genes with this domain]
SMART	291	315	Zinc finger, RanBP2-type	SM00547	IPR001876 [Display all genes with this domain]
PROSITE patterns	293	312	Zinc finger, RanBP2-type	PS01358	IPR001876 [Display all genes with this domain]
Superfamily	257	281	Zinc finger, RanBP2-type superfamily	SSF90209	IPR036443 [Display all genes with this domain]

Other features

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Feature type
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End

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Feature type	Start	End
MobiDBLite	140	161
MobiDBLite	142	156
MobiDBLite	215	236
MobiDBLite	220	230
Seg	193	200

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