Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EFJ29263

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Location

SuperContig GL377578: 2,509,335-2,511,100 reverse strand.

About this transcript

This transcript has 8 exons and is annotated with 14 domains and features.

Gene

This transcript is a product of gene SELMODRAFT_146931 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	EFJ29263	1368	307aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D8RGA6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	31	295	Guanine nucleotide-exchange factor Sec12-like	PTHR23284	IPR045260 [Display all genes with this domain]
SMART	30	65	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	69	107	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	76	107	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	82	116	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	110	155	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	158	197	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	201	240	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Superfamily	37	242	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	11	243	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type	Start	End
Phobius	1	249
Phobius	250	271
Phobius	272	307
TMHMM	252	271

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