Oryza sativa Japonica Group (IRGSP-1.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationExternal ReferencesSupporting evidenceID History.
Chromosome 12: 11,419,984-11,429,093 forward strand.
This transcript has 7 exons, is annotated with 12 domains and features, is associated with 315 variant alleles and maps to 65 oligo probes.
This transcript is a product of gene Os12g0294100 Show transcript tableHide transcript table
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1 GCACGCGTACAGCACGCCGCCAGCTGCTGTCGCTTCTCGGCTTTCCTCGCGAGTCGAGGC 60 ............................................................ ............................................................ 61 TCGCGTCGCGTGGTCGGCCCCTCCGCCGGCCGTTCCCTACTTCCTTCGCCGCCAGTCGCC 120 ............................................................ ............................................................ 121 CGGAAAGAAGGCGCATCCACCCTTCTCGCTGAGACATTTCCATCGAGCCACCCGCAGGCG 180 ............................................................ ............................................................ 181 GCGAAGGAAGGGATTGCGCGGCGCGATGGAGGGAGGCGGAGAGGATACGGCGGCGGCCAT 240 .........................ATGGAGGGAGGCGGAGAGGATACGGCGGCGGCCAT 35 .........................-M--E--G--G--G--E--D--T--A--A--A--M 12 241 GGCGATGGAGGTGGAGATAGAGGCAGAGGCCGTCCTATGCATGGGGACATCCTCGCCCGC 300 36 GGCGATGGAGGTGGAGATAGAGGCAGAGGCCGTCCTATGCATGGGGACATCCTCGCCCGC 95 12 --A--M--E--V--E--I--E--A--E--A--V--L--C--M--G--T--S--S--P--A 32 301 GACGTCCAACTCCTCGTCTCCAAGCCCTAACAGCGGCATCTCCTCGAGACGTTTGGGCCT 360 96 GACGTCCAACTCCTCGTCTCCAAGCCCTAACAGCGGCATCTCCTCGAGACGTTTGGGCCT 155 32 --T--S--N--S--S--S--P--S--P--N--S--G--I--S--S--R--R--L--G--L 52 361 CAAGAACAGCATCCAGACCAACTTCGGCGACGACTACGTCTTCCAGATAGCTTCTTGTCA 420 156 CAAGAACAGCATCCAGACCAACTTCGGCGACGACTACGTCTTCCAGATAGCTTCTTGTCA 215 52 --K--N--S--I--Q--T--N--F--G--D--D--Y--V--F--Q--I--A--S--C--Q 72 421 GGAGAACTCTACGCTCGCGGTTTCCTTGTCAACAAATGCACTAAAATTATATTCTCCAGC 480 216 GGAGAACTCTACGCTCGCGGTTTCCTTGTCAACAAATGCACTAAAATTATATTCTCCAGC 275 72 --E--N--S--T--L--A--V--S--L--S--T--N--A--L--K--L--Y--S--P--A 92 481 AACTGGGCAATTTTTGGGTGAATGCACTGGACACAGCGGATCAATCCATGAAATTTCCTT 540 276 AACTGGGCAATTTTTGGGTGAATGCACTGGACACAGCGGATCAATCCATGAAATTTCCTT 335 92 --T--G--Q--F--L--G--E--C--T--G--H--S--G--S--I--H--E--I--S--F 112 541 TTCAGCCCCATCATCCCCACAAGTAATCTGTTCTTGTTCTTCAGATGGAACTATAAGAGC 600 336 TTCAGCCCCATCATCCCCACAAGTAATCTGTTCTTGTTCTTCAGATGGAACTATAAGAGC 395 112 --S--A--P--S--S--P--Q--V--I--C--S--C--S--S--D--G--T--I--R--A 132 601 TTGGGATACAAGAAGCTTTAAGCAGATATCTTTGCTAAGGGGTTCTCAAGAATTGTTCAG 660 396 TTGGGATACAAGAAGCTTTAAGCAGATATCTTTGCTAAGGGGTTCTCAAGAATTGTTCAG 455 132 --W--D--T--R--S--F--K--Q--I--S--L--L--R--G--S--Q--E--L--F--S 152 661 CTTCTCCTTTGGTGGATCAAGTGGTAACCTACTTGCTGCCGGTTCTAATTCCCAGGTTCT 720 456 CTTCTCCTTTGGTGGATCAAGTGGTAACCTACTTGCTGCCGGTTCTAATTCCCAGGTTCT 515 152 --F--S--F--G--G--S--S--G--N--L--L--A--A--G--S--N--S--Q--V--L 172 721 ATTGTGGGATTGGAGAAATTCTAAACAGCTAGCATGCTTAGAGGAATCTCACATGGATGA 780 516 ATTGTGGGATTGGAGAAATTCTAAACAGCTAGCATGCTTAGAGGAATCTCACATGGATGA 575 172 --L--W--D--W--R--N--S--K--Q--L--A--C--L--E--E--S--H--M--D--D 192 781 TGTGACTCAAGTAAAATTTGCACCACATCAGCATAGCAAACTCATTTCTGCAGCAGTTGA 840 576 TGTGACTCAAGTAAAATTTGCACCACATCAGCATAGCAAACTCATTTCTGCAGCAGTTGA 635 192 --V--T--Q--V--K--F--A--P--H--Q--H--S--K--L--I--S--A--A--V--D 212 841 TGGATTAATATGTGTTTTTGACACTGATGGTGACATGAACGAGGACAATCATTTGCTATC 900 636 TGGATTAATATGTGTTTTTGACACTGATGGTGACATGAACGAGGACAATCATTTGCTATC 695 212 --G--L--I--C--V--F--D--T--D--G--D--M--N--E--D--N--H--L--L--S 232 901 TGTATGTTTTAGTTGTTTCCTGTGCCCAAATGCCTTGTCTTACATATCCTGCTATGTCAG 960 696 TGTATGTTTTAGTTGTTTCCTGTGCCCAAATGCCTTGTCTTACATATCCTGCTATGTCAG 755 232 --V--C--F--S--C--F--L--C--P--N--A--L--S--Y--I--S--C--Y--V--R 252 961 GTTATGGTTTGATACTTTGATGTTTGTTGTTTACTGAAGTATCCCATTAGTACTTCAAGT 1020 756 GTTATGGTTTGATACTTTGATGTTTGTTGTTTACTGA....................... 792 252 --L--W--F--D--T--L--M--F--V--V--Y--*-....................... 263 1021 TATGTTCCTTTGTTGTTTCATATGACGATGCCAAATGCGCATGATGTTTTTTCCCCTTTT 1080 ............................................................ ............................................................ 1081 TGTAACTTCAATAACTGGCCATGTGTGTAATATGCTGTTATTTGTTCGTGAAGTACATGA 1140 ............................................................ ............................................................ 1141 TAGAGCTTACAATTTTATTCCTCACCGCTTCTTATAACAATGCTACTGTTAATCTCCATA 1200 ............................................................ ............................................................ 1201 GTTCTTTGTTAATCTTCATACAATAGAGCTTACAATTCTTGTATGTTACGGATGCAGTTC 1260 ............................................................ ............................................................ 1261 TAGTTTTGCCTATTCTTTTCTTGGTTGTTAGTACTATTCAATTGTGGTATTACAATATCT 1320 ............................................................ ............................................................ 1321 CCCTTTTGAAGTATTTTTTTTTTAATTTTAATGGTTCTGCATGAGGTTATTTGTATGAAG 1380 ............................................................ ............................................................ 1381 ATGTCAATTTTGGGTGATAGTTCTCTGATATCTGATCTTCCCTAGGTTATGAATGTGGAG 1440 ............................................................ ............................................................ 1441 ACTTCTGTTGCAAAAGTGGGATTTTTCGGCAACACATACCAGAAGATCTGGTGCTTGAGC 1500 ............................................................ ............................................................ 1501 CACATTGAAACATTAAGTACCTGGGACTGGAATGATGGGAGTAGAGAACTGAATATAGAT 1560 ............................................................ ............................................................ 1561 GATGCTCGTTCCTTGGCAACTGATAGGTGGAACCTTGACCATGTGGACTATTTTGTTGAT 1620 ............................................................ ............................................................ 1621 TGTCACTACTCTCTGCCCGACGACAAGTTATGGGTGATTGGCGGCACAACTGCAGGGACA 1680 ............................................................ ............................................................ 1681 ATAGGTTACTTCCCTGTAAGAGCTGGTCTTGAAGGGGCAATAGGTTCCGCGGAAGCTATC 1740 ............................................................ ............................................................ 1741 CTTGAAGGAGGCCATACAGACGTTGTTAGAACCGTATATCCAGCCGCAAACACTCATACT 1800 ............................................................ ............................................................ 1801 GGGCAAAACAGGGGCATTTTTGGATGGACAGGTGGCGAAGATGGTCGTCTGTGTTGTTGG 1860 ............................................................ ............................................................ 1861 CGCTCTGGTGAAATTGCTGAGATGAACAAGTCTTGGATCTCTAGTTCATTAGTGTCAAGG 1920 ............................................................ ............................................................ 1921 GTTCAAAAGAAAGCTAAATGCCGACAACAGCCATACTAACTGATGCGATATATGTCCGAC 1980 ............................................................ ............................................................ 1981 ACATATGATTAACAAAATACAGCTGTTCTCCTATATTAGGAAGGTTGACAATTGTTAATC 2040 ............................................................ ............................................................ 2041 CGTAATGTTTCCCTTGTATGTGCTATATAGATTATTTTCGTTTCAAATGAAGTAATGGTT 2100 ............................................................ ............................................................ 2101 GTGTTT 2106 ...... ......
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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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