Oryza sativa Japonica Group (IRGSP-1.0)
Location
About this transcript

This transcript has 4 exons, is annotated with 14 domains and features and is associated with 693 variant alleles.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
MMS2-201Os09t0297100-02831148aa
 
Protein coding
A3BX32 Q69TB0 Ensembl Canonical
MMS2-202Os09t0297100-01827148aa
 
Protein coding
A3BX32 Q69TB0 -
Codons
  • Alternating codons
  • Alternating codons
Exons
  • An exon
  • Another exon
Variants
  • loading
Other
  • UTR
Markup
  • loading
                                                                          
     1 CTCGTCAATCCCCAAACCCTCCTCCTCCTCTCCGGCGATCCACCCATCGATCGGCGATGA     60
       ........................................................ATGA      4
       ........................................................-M--      1

                                                                          
    61 CGCTGGGGAGCTCCGGCGCCGGATCGAGCGTCGTCGTTCCGCGAAACTTCAGGTTGCTAG    120
     5 CGCTGGGGAGCTCCGGCGCCGGATCGAGCGTCGTCGTTCCGCGAAACTTCAGGTTGCTAG     64
     2 T--L--G--S--S--G--A--G--S--S--V--V--V--P--R--N--F--R--L--L--     21

                                                                          
   121 AAGAGCTTGAACGTGGTGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGATG    180
    65 AAGAGCTTGAACGTGGTGAAAAGGGCATTGGAGATGGAACCGTGAGCTATGGAATGGATG    124
    22 E--E--L--E--R--G--E--K--G--I--G--D--G--T--V--S--Y--G--M--D--     41

                                                                          
   181 ATGCAGATGACATCTACATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTG    240
   125 ATGCAGATGACATCTACATGCGGTCTTGGACTGGCACCATCATTGGTCCACATAATAGTG    184
    42 D--A--D--D--I--Y--M--R--S--W--T--G--T--I--I--G--P--H--N--S--     61

                                                                          
   241 TCCATGAAGGTCGCATCTACCAGCTGAAGCTGTTCTGTGACAAGGACTACCCAGAGAAGC    300
   185 TCCATGAAGGTCGCATCTACCAGCTGAAGCTGTTCTGTGACAAGGACTACCCAGAGAAGC    244
    62 V--H--E--G--R--I--Y--Q--L--K--L--F--C--D--K--D--Y--P--E--K--     81

                                                                          
   301 CACCATCTGTCCGGTTTCATTCAAGAATCAATATGTCGTGTGTTAATCATGAGACTGGAG    360
   245 CACCATCTGTCCGGTTTCATTCAAGAATCAATATGTCGTGTGTTAATCATGAGACTGGAG    304
    82 P--P--S--V--R--F--H--S--R--I--N--M--S--C--V--N--H--E--T--G--    101

                                                                          
   361 CGGTTGACTCGAGGAAGTTTGGTGTTCTAGCAAACTGGCAGCGCGAGTACACCATGGAGA    420
   305 CGGTTGACTCGAGGAAGTTTGGTGTTCTAGCAAACTGGCAGCGCGAGTACACCATGGAGA    364
   102 A--V--D--S--R--K--F--G--V--L--A--N--W--Q--R--E--Y--T--M--E--    121

                                                                          
   421 CTATCCTTACCCAGCTCAAGAAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGCAAC    480
   365 CTATCCTTACCCAGCTCAAGAAGGAGATGGCAACCCCGCAGAATCGCAAGTTGGTGCAAC    424
   122 T--I--L--T--Q--L--K--K--E--M--A--T--P--Q--N--R--K--L--V--Q--    141

                                                                          
   481 CTCCAGAAGGGACGTTCTTCTAGAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAG    540
   425 CTCCAGAAGGGACGTTCTTCTAG.....................................    447
   142 P--P--E--G--T--F--F--*-.....................................    148

                                                                          
   541 ATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTAATTGTTTTCTAGTTCAAT    600
       ............................................................       
       ............................................................       

                                                                          
   601 TTGATATATGCCCTGCTTTCTGTGTACCAACAACCGAGTCCAACTTTGCGCCTCGTGATT    660
       ............................................................       
       ............................................................       

                                                                          
   661 CGTCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGCAA    720
       ............................................................       
       ............................................................       

                                                                          
   721 AATTGGCAGTATGAGGGATGTAAAATTGGAAACAGATGCTGTGTCAAGAAATGTGTAACT    780
       ............................................................       
       ............................................................       

                                                                          
   781 GCAGGTCCTTTATATTGCCTACATGAATATAGTCCGTGCATGCTTTTCTTT             831
       ...................................................                
       ...................................................