Oryza sativa Japonica Group (IRGSP-1.0)
Location
About this transcript

This transcript has 9 exons, is annotated with 5 domains and features, is associated with 118 variant alleles and maps to 71 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-Os04t0670400-022109236aa
 
Protein coding
A0A0P0WG44 Ensembl Canonical
-Os04t0670400-01235785aa
 
Protein coding
A0A0P0WG34 -
Codons
  • Alternating codons
  • Alternating codons
Exons
  • An exon
  • Another exon
Variants
  • loading
Other
  • UTR
Markup
  • loading
                                                                          
     1 AGAGTACGATTTGATACTATCTGCGATTCCGCCTCCCCTCCCCCTCGCCGCCGCCGCCGC     60
       ............................................................       
       ............................................................       

                                                                          
    61 CGCGGGGAAATCTAGGCGAGACTCCACTACTACCGCACGTGTCGTAATGGCTCGGAACAA    120
       ..............................................ATGGCTCGGAACAA     14
       ..............................................-M--A--R--N--K      5

                                                                          
   121 GAAGAAGGTAGCCGTGGCGGCGCCCAAAGCCCGGAAGCCGAAGCGTGATGCAGAGGAGAA    180
    15 GAAGAAGGTAGCCGTGGCGGCGCCCAAAGCCCGGAAGCCGAAGCGTGATGCAGAGGAGAA     74
     5 --K--K--V--A--V--A--A--P--K--A--R--K--P--K--R--D--A--E--E--K     25

                                                                          
   181 GAAGTTCGCGAAGAAGGCCGACATGACGGAGTTCCGGGCGCAGCTGGACTCGCTGGGGTT    240
    75 GAAGTTCGCGAAGAAGGCCGACATGACGGAGTTCCGGGCGCAGCTGGACTCGCTGGGGTT    134
    25 --K--F--A--K--K--A--D--M--T--E--F--R--A--Q--L--D--S--L--G--L     45

                                                                          
   241 GAAGATTATCGAAGTTAGTGCGGATGGCAACTGCTTCTTTAGGGCAATGGGCGACCAGCT    300
   135 GAAGATTATCGAAGTTAGTGCGGATGGCAACTGCTTCTTTAGGGCAATGGGCGACCAGCT    194
    45 --K--I--I--E--V--S--A--D--G--N--C--F--F--R--A--M--G--D--Q--L     65

                                                                          
   301 CGAAGGCAACGAGGAAGAGCACATGAAGTACCGTGCAATGATTGTGCAATACATTAAGGA    360
   195 CGAAGGCAACGAGGAAGAGCACATGAAGTACCGTGCAATGATTGTGCAATACATTAAGGA    254
    65 --E--G--N--E--E--E--H--M--K--Y--R--A--M--I--V--Q--Y--I--K--E     85

                                                                          
   361 GCACCGTGTGGATTTTGAGCCATTCATTGAGGACGAGGAACCGTTTGAGAAATATTGTGA    420
   255 GCACCGTGTGGATTTTGAGCCATTCATTGAGGACGAGGAACCGTTTGAGAAATATTGTGA    314
    85 --H--R--V--D--F--E--P--F--I--E--D--E--E--P--F--E--K--Y--C--D    105

                                                                          
   421 CTCTATGCTTGAGGATGGGACTTGGGCTGGTCATATGGAGTTGCAAGCAGCTTCTATTCT    480
   315 CTCTATGCTTGAGGATGGGACTTGGGCTGGTCATATGGAGTTGCAAGCAGCTTCTATTCT    374
   105 --S--M--L--E--D--G--T--W--A--G--H--M--E--L--Q--A--A--S--I--L    125

                                                                          
   481 CAAGAGAAAAAACATATGCATCCACATGCTTAACTCACCACGATGGTACATAAGAAACTT    540
   375 CAAGAGAAAAAACATATGCATCCACATGCTTAACTCACCACGATGGTACATAAGAAACTT    434
   125 --K--R--K--N--I--C--I--H--M--L--N--S--P--R--W--Y--I--R--N--F    145

                                                                          
   541 TTCTGATCGTGAAGCTACCAGTATGATTCATTTATCGTATCATCAGGGTGAGCACTACAA    600
   435 TTCTGATCGTGAAGCTACCAGTATGATTCATTTATCGTATCATCAGGGTGAGCACTACAA    494
   145 --S--D--R--E--A--T--S--M--I--H--L--S--Y--H--Q--G--E--H--Y--N    165

                                                                          
   601 TAGTGTCAGACTGAGGGAAGATCCATGTCAAGGTCCTGCAATGCCAGTTATTATCAAGGC    660
   495 TAGTGTCAGACTGAGGGAAGATCCATGTCAAGGTCCTGCAATGCCAGTTATTATCAAGGC    554
   165 --S--V--R--L--R--E--D--P--C--Q--G--P--A--M--P--V--I--I--K--A    185

                                                                          
   661 AGATGCCAATGTAGCTAGCACAAGCAATAATGCTCAAACAAAAGCAAAGGCGAAACAGCT    720
   555 AGATGCCAATGTAGCTAGCACAAGCAATAATGCTCAAACAAAAGCAAAGGCGAAACAGCT    614
   185 --D--A--N--V--A--S--T--S--N--N--A--Q--T--K--A--K--A--K--Q--L    205

                                                                          
   721 CAGAAACACAACAGTTCACATTCTAAAAAGGGAAAGTCAAAAACCAAGGAATGCTCTTGT    780
   615 CAGAAACACAACAGTTCACATTCTAAAAAGGGAAAGTCAAAAACCAAGGAATGCTCTTGT    674
   205 --R--N--T--T--V--H--I--L--K--R--E--S--Q--K--P--R--N--A--L--V    225

                                                                          
   781 GGATCTGCTAGGAAGCACAAGCCTTCTTGTAATTTAGCCACAACTGTAGCATCGAGAGAA    840
   675 GGATCTGCTAGGAAGCACAAGCCTTCTTGTAATTTAG.......................    711
   225 --D--L--L--G--S--T--S--L--L--V--I--*-.......................    236

                                                                          
   841 CCTCCAAAAACAACTGCACCATCGAGAGAACCTCCAAAGTATGGCTTTATAATGGTTTTG    900
       ............................................................       
       ............................................................       

                                                                          
   901 CTAAAAATATGGCGCCACATTTTTGACTTGATTTCAGTCATTTTTTTCCCATTCGGATTG    960
       ............................................................       
       ............................................................       

                                                                          
   961 CTACCATTCTTTTATACTCCTATGTAAGTATGTTTCGCTCTACTATCTCCTCTTTCAAGT   1020
       ............................................................       
       ............................................................       

                                                                          
  1021 AGGTAATTAATTGTTTTCATCCTAATTCTCTTATATAGTGTGTGCTGCAAAAAATATGGT   1080
       ............................................................       
       ............................................................       

                                                                          
  1081 GTAAGTATTGAGATTTGGTTTTAATTTTTTTTTGTTTTTTGGTGGAAAATGTGGTGTCTT   1140
       ............................................................       
       ............................................................       

                                                                          
  1141 AAATATAGCTAATCCCCTTTATAATGTTTCTGTCCTTTTGTTTGTCTTTTACCATATTCT   1200
       ............................................................       
       ............................................................       

                                                                          
  1201 ATTCTACAACTGAACTTATGTCCTGCTGTTCGCATTGTAAGCATTCTTTCAAATGGAATT   1260
       ............................................................       
       ............................................................       

                                                                          
  1261 TTTGGGGGGTGAAATCAATATTTCCAGCGTATTTGCATAGTGCATTGCTGCTGTTGTATC   1320
       ............................................................       
       ............................................................       

                                                                          
  1321 TGGCCTATGAAACCTTAACAGTATTGCTGCAAAATATGCACTTATCCCATATGCCTTAAA   1380
       ............................................................       
       ............................................................       

                                                                          
  1381 GTCACCGACCTGATTACTATTTCCTTTTTCACTAGGGAGGTTAGTTGCATTGCATGTTTA   1440
       ............................................................       
       ............................................................       

                                                                          
  1441 ACACAATGCTGGAAGTGTTATGTACTAATACTATCTGCTTAATGTGCTTTACTATCAGGA   1500
       ............................................................       
       ............................................................       

                                                                          
  1501 CCAAAGGTGGCCAAGGGAAAGGCCAGAAGGGGAAGAAGCAAAAGAAGAAAGAACAAGATG   1560
       ............................................................       
       ............................................................       

                                                                          
  1561 AAACACCAGCCATCCGGGATCACGATTCTAAAGTTGCACCAGATCTAGGAGCTCTTTGCA   1620
       ............................................................       
       ............................................................       

                                                                          
  1621 TATGAACATGGTCGACGAGGGTGATGTTCTCCTCAGTGTGTAGCCGCCAGGAATGTGCGG   1680
       ............................................................       
       ............................................................       

                                                                          
  1681 GGCATCAGTTTTGAAGAGAGATGTCTGCGGTCTACCTTGCTTGGACGCCATGATCTAGAT   1740
       ............................................................       
       ............................................................       

                                                                          
  1741 GGTGATTTTTCTCTTGCCCAGTTGACGGCTTCACGTCACTGCCTTCTGCTGACTGACTGT   1800
       ............................................................       
       ............................................................       

                                                                          
  1801 TGTTAAGCCTGTCCAAGTTTCAGGATGGGATCATGGGACTGACGGTGAGGTGGTGATCTC   1860
       ............................................................       
       ............................................................       

                                                                          
  1861 AGTGGGCACAGAAACATGAATGAGCTGTTGATACATAGCTTCTTTTCTTCATACATACTT   1920
       ............................................................       
       ............................................................       

                                                                          
  1921 TACCTGTGGATCAATGCCATGTAAAACAATGATCAGTCGTGCAAAGCATATTAATTTTGT   1980
       ............................................................       
       ............................................................       

                                                                          
  1981 GAGAATTATATCATAATAGAGTATTCCCTGTCCTAACAAAACAAAAATACGCTCTATTGT   2040
       ............................................................       
       ............................................................       

                                                                          
  2041 TTGAGATGGAGGGATAGTATAATGGGTTCATCCTGGAGTATATATAGCCAGTCAGTCACA   2100
       ............................................................       
       ............................................................       

                                                                          
  2101 ATTGCCTTC                                                      2109
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