Oryza sativa Japonica Group (IRGSP-1.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationExternal ReferencesSupporting evidenceID History.
Chromosome 12: 3,305,300-3,310,887 reverse strand.
This transcript has 8 exons, is annotated with 2 domains and features, is associated with 204 variant alleles and maps to 52 oligo probes.
This transcript is a product of gene Os12g0165000 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........acacaaattcattccatgctttgccacactgaagcaggcaatttctttga
| ||||||
| 1 | Os12t0165000-02-E1 | 3,310,887 | 3,310,689 | - | 0 | 199 |
CAGAATAACTGTTGCCTGAGTAAACATAGAAAGTTTGTTTAACTATGGGCAACATTTTTA TTGGTGCTTAATGAGTGCTTATATCATGATTATACCACTTTAGGTCCCTATACACAAAGA ACCATCTTCAATTATTCCTGGAGTTCCAGCAATAACTCAGCATGAGATCCTGAATAATAG AAGACATGTATTGACGAAG |
| Intron 1-2 | 3,310,688 | 3,310,603 | 86 |
gtgattacaagtgttatttccatca..........tatatgccttgctcctatttcatag
| |||
| 2 | Os12t0165000-02-E2 | 3,310,602 | 3,310,537 | 0 | 0 | 66 |
GATACTGCTGGTTCTGTCAAATTGTGGGAGATTACTCGAGGAGCTGTTATTGAAGACTTT GGCAAG |
| Intron 2-3 | 3,310,536 | 3,310,343 | 194 |
gttcttatttttgctcaatttagcg..........aagccactccactttgttcgtgcag
| |||
| 3 | Os12t0165000-02-E3 | 3,310,342 | 3,310,304 | 0 | 0 | 39 |
GTTTCTTTTGAGGATAAGAAAAAAGAGTTGTTTGAGATG
|
| Intron 3-4 | 3,310,303 | 3,310,220 | 84 |
gtattactgataaactcatgatctc..........atttgtgtctttacttttaggttag
| |||
| 4 | Os12t0165000-02-E4 | 3,310,219 | 3,310,090 | 0 | - | 130 |
CATACCTGCCTGGTTTACCATGGATGCTCGATTGGGATGCCTGTCTGTCCACCTGGATAC ACCTCAATGCTTTTCTGCAGAAATATATGCAGTTGACTTAAACGTTGCAGGAGCACAGGA AGATCTTAAG |
| Intron 4-5 | 3,310,089 | 3,309,833 | 257 |
gtttgcacagaatcatatgttgtca..........acaattccctcttaaaaaaatgcag
| |||
| 5 | Os12t0165000-02-E5 | 3,309,832 | 3,309,480 | - | - | 353 |
ATTAATTTGGCTCAGGAGACTCTCCGTGGTTTGTTAGTTCATTGGAGTAAAAAAAAGCAG AGATCTGGCTCACACGGCTTGTCAAATGGTGACACTTCAACAGGAAAAGATGTATCCTTG AAAAATTTGCCCCATCCAAGATCTGAGGTTGATGATGGGGCTGAAAATCATGCAAGTCAG ATGCTTCCCTCATTTGAGTTTTCCACAGTTTCGCCTCCATCAATCATCACAGAAGGTTCA AGTGGAGGGCCTTGGAGAAAGAGAATTACAGATTTAGATGGAACCGAGAGCGATATCCCA TGGTGGATTGTGGACTGTGTTGAGCATAATCGATTTCCAAAAGAGAATACAAA |
| Intron 5-6 | 3,309,479 | 3,308,298 | 1,182 |
gtaattgctcatttctacttcctat..........tgttattttcttttctttaatgtag
| |||
| 6 | Os12t0165000-02-E6 | 3,308,297 | 3,308,204 | - | - | 94 |
GTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAACACAAGGGAA ACTTAGTGCTCCACGGATATTGCGGATTCACAAA |
| Intron 6-7 | 3,308,203 | 3,306,713 | 1,491 |
gtaagattgctttgaaatttcttga..........attgaagctatatttctttgtacag
| |||
| 7 | Os12t0165000-02-E7 | 3,306,712 | 3,306,532 | - | - | 181 |
GTAGCTAACTATGTGGTCGAGAAACTTGATAGACCACTGGATGGCAATGCTGACAGCACA TTTGGAATGGGATTGACTTCTGGCCAATCACAATTTTCAGCGCTAGATAGTTCTTCACGG CTTGGACTAAAACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG G |
| Intron 7-8 | 3,306,531 | 3,305,789 | 743 |
caagtatttctaaattcaactgttg..........ataaatattactaatatgaagcagg
| |||
| 8 | Os12t0165000-02-E8 | 3,305,788 | 3,305,300 | - | - | 489 |
TTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGAAGCCAGAGG ATTTGATTCTTAACTACAAAGTGGTCCAGTCAAGATGATTGCAACTTGAAACGAATGTTC ACCCTAGGAGCTGAGGAAATCAGTGCGGAGCAGGTCTTGTTGAAGATAACCATACGACCT AGAGAGAAAACTATCATCACGCTAGAGACAGAAGCGTTTCGCCCTTGTGTGCCTCCTTAG CGAAACCGCAAAAATTCTACCTCTGTAAAGTTCTCTGTGAATGTTGAACTACCACCAGGC CCTCTAGTGAGGTGTCCCATAGCACAGGTGTAATGATCTCTTCTGGCTACCAAGCTTGTA AATTTAGGGATTTGGGGTGCTTAAATAAACTTTAAATGGGATATAATTTCCCCTTCTCTT TTTTTGTGTTTACACATATAAGATTTGTAAGGAAGGTATCAAACCGTGCAGCGATTTGCT GTTTGATCC |
| 3' downstream sequence |
tgatcttggactgttacttgctgttttgcattgttttgggagtcccctaa..........
|
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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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