Oryza sativa Japonica Group (IRGSP-1.0)
Location
About this transcript

This transcript has 4 exons, is annotated with 14 domains and features and is associated with 156 variant alleles.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
CYP714C3-201Os11t0119200-013306491aa
 
Protein coding
C7J999 Q2RBA3 Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........aatccaatccccaaaatctcaaaattccattgcttcccgtatttggcgtt
1Os11t0119200-01-E1856,524856,729--206
GCTCCACTGATTCGATTGGCGTCACCTTCATCAATCGATCGCTGCAGACTGCAGTTGGTT
CCCTCCTCTCCTGCCAACGACCACGAGCCCTAGTTTAGGCCGCCCCCAAATCTACTGCCA
TCCCCGACTAGTATCCCATTTCTCTTGATTTTAAGGGATCCTGAGGGGGATGCTTCCTCT
ACTCTGCTGCAGCAACGCTTGACAAG                                  
 Intron 1-2856,730856,865136
gtggaggttccgctgtttctcacca..........cgctaactacaaattttccctccag
2Os11t0119200-01-E2856,866859,458--2,593
GCTATCACATCCAATCCAATGGTGCACTGCTGACCAACTTCAGTGTCGGGATATCCATGT
CTGACCATCAATTTGCCGGCCAACCAGATGTGCAGTGCCTAGTTTGCACAAGGCCGTTTA
CTTTGGATGCTCAGGTGACTGATACCTTTGAAGCTTTAGCCATATGCAGGGACTGCAAGG
CCACAGTACTTAACGATGTCGAAAGAGATGAAATAACCAGCACTTCTCATCACACAAGAC
GGAGAAGGCAGAGATCCAGGACTGCAAGTATTGATTCCCTGGAGGACGCATTCTCGCAGG
AGTTCTCTCAGCTGATCGACTTAGCAAGAAGACAAGGTCGTGAAACGGATATTGATTCTT
CGTCAGTCCTGCCGCAACATGCGTCGTACAATGCGACACCAAGCCACTCTCAAAGATGGC
ATGCTTCAGATGACGAGAGCGACGGCCTTAATTATGTTGATTCTGTGTTTGGTGAAATTG
AATCAACCATCAGTTTTGGTGACTATGGTGCGGATTCAGACACCTCCATAGAGGAACATA
GTGTATCGGCAAGGAGGAGGATTTCCATTCAACTTGACAATGGAAGTTACATGAACACAG
ATACCGATATTGATCCCATGAATGCTAGGCTGGATCAGTGGGATTCAGATGACCAGGAAG
ATGTGGAAGAGTCTGGTTTTGATGAAACAATAAACACCATGACCCAGCACCAGCAGCAAT
CACATGATATTCAGCTAAGTGGATTGAGTGAGGACGAATCTGAAGATGGTGTATGGAATT
GGAGCGTGGCTGTACGTCAAAGAGCAAACGTGACAAACTTGCTAGAGGACATGGAAGGGC
CAGAAATGAGGACAACTTTTGTCGGGAATCCAGATGATTATGTTGATGCAAGGCAGTTCG
AGATGCTCCTTGAGCAATTTGCTGAGGACAACAGTTCCAGAAGAGGAGCTCCACCAGCTG
CTACATCCTTTATTGAAAATCTCCCCTCTGTGATTATCTCCACAAGTCATCAGATAAATG
ATGATGTGATCTGTCCGGTCTGCAAAGATCCAATTCCTACCAGAGCTAGAGCAAAACAGC
TACCATGCATGCATCTTTATCATTCATCGTGCATCTTGCCATGGTTTAGTTCTAGAAATA
CATGTCCTGTCTGCCGATATGAGCTTCCTACAGATGATGCAGAGTATGAAAGGTCCAAGC
AAGCCACAACCAATGTAAGAGACATTCAGGTTGTGGAAGAAAATTCTGATGAACAAGAGG
TCCAGGTAACTCGTCAGATGGCTGTTGGTGCTATCGAAGAGACTAATACAAGTGAACACA
ATGTTCGTGTTGATGAGCAACCAAGCAGTGCACGCAGGCGCAGTGGATGGCTTTTTATTG
CTGCTGCTCCAGTCGTAAGCCTTATCGGTTTCGCTCTAGTTTTATGCTTTACAAATCCTG
CTAGGAGTGGTAGAAGGCAACTGTACTGTAGATCCCCAAGTGCCACTGAAGTACATGTGG
GTACCAAAAAGAGTTGGTGGTCTATGTTCTAGAATGTTCCGGCGGTACATCTGATAACAA
AATGACTATATATGGTGGTGCGTGATTGTTTCTTTAGAATAGTTTTATTTTAAAATTTTC
AAATGTTGTAGTTGCTGCAGTGACCGGTCGGAGTGTTGTAAAAGAATTCACATGCCTAGT
TTCTTCTGCTACTTTGCTCAGTCAAGAAAAGTGTGTATTGATACTTGCTATTTGTTTAAC
ATATATGTGCCATTGGATATCCTATGCTTCCTTGATTCCTTCTGTTGTTGCCTCATTTAA
AAATCACCATGGAAGAGAAGACTCCATTTGCATTCAGTGCTTTTCAGAATTCTACCCAGT
GTCCAGTTGAGAAGTAATTCGTCTCCTATTGTTTGAAGCTCGCGTCTAGGCTTCATTGGT
TTGTGCCTCACAAATTTTTTCTGTATGTTAATTCTTGGTATATTGTTTCTCTCATGAAAT
GCTTCTGGTAGCTAAAGTAGGTTGTGCATAATGCAGTATGCTAGCACAGAACTTAAGGCT
GGTTTTAGATTGTCATCAGGTAAAACAGGGGGATCAAAATGATTTTCTTGCAGTAATTTA
GTCTGTTGAATTCACATCGTCATGAACTGGAAGGTCTAACTGATTGTAAATTGATCCCAA
GATGTGAAAGCAACCTACAAAACAATCAGTTGTTGAAGAAAAGGTCAAACAAAAGAATTC
ACATGCTTGAGGTGTTAAACAAATATATAAAGCTAGTGCACGAAAGACCTAATGTACTGA
AGATTTGACAGAAATAATTTGCTTCTCTGGTTCCCTATGCTCATGGAGAAATTGCTTGCA
CTCATTGTTGTTCTTGTCATACTTCTTAGCTTAGCTCTGTTCTACTTGTGCAACATCCTA
TGGCTGAGGGCTGTGAAGATAAGGAAGAAGTTGAGGAGGCAAGGCATAAGGGGTCCCAAG
CCTACTTTTCTCTATGGCAACACCAAGGAGATCAAAAGAATCCGACAAGAACTCAAACTT
TCACAGAAGCAAGGCACCAACAACTTCATCTCCACCCTCTTCCCACACTTCCTCCTTTGG
CGGGAAACTTATG                                               
 Intron 2-3859,459860,378920
gtatgtatatgctagtgttttgtga..........taatttacatgtgtattttgaccag
3Os11t0119200-01-E3860,379860,605--227
GCCCAGTGTTCCTATACTCAACAGGAGCTATGGAGATACTACAAGTTTCTCACCCAGATA
TGGTGAAGGATATAGGCCGGTGGACACCATCAGAGCTTGGTAAGCCTAATTATCTAAAGA
AATCTCGCAAGGCCCTCTTTGGAGGAGGTTTATTTACAGAGAATGGTGATGAATGGGCCT
ATCAGAGGAAGATAATTGCACCAGAGTTCTTCATGGATAAGATTAAG             
 Intron 3-4860,606860,70095
gtaccattaaattgtgattgcttgt..........agttgttatttatatatgcatgcag
4Os11t0119200-01-E4860,701860,980--280
GGTATGATACAGCTAATTGAGGATGCAACCGTTCCAGTGTTAGAAGCATGGGAGGATATG
ATTGACGATGAGGGAGGGTGTAGGGAAATAGTTGTCGATGATTACTTGCGGAACTTGTCA
GCAGATGTAATTGCCAGGGCTTGCTTTGGGAGTAGCTTCACAAAAGGAGAAGAAATATTT
TGCAAGCTTAGGCAGCTCCAAAAAGCAATTGCTCGGCAAGATTCGTTTGTTGGTCTGTCT
GCACTGTGGTAAGTCAATGAAATTAGTGGCAATAAAATGA                    
3' downstream sequence
gaaccttcacgtgtgtatcatgatattaataaccaagaaagagtcttttg..........