Oryza sativa Japonica Group (IRGSP-1.0)
Location
About this transcript

This transcript has 4 exons, is annotated with 15 domains and features and is associated with 119 variant alleles.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
OsRFPH2-17-201Os07t0479100-011035249aa
 
Protein coding
A0A5S6RCP2 Q7XI81 Ensembl Canonical
OsRFPH2-17-202Os07t0479100-021017203aa
 
Protein coding
A0A0P0X5T7 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........tctcaggatttagtatatacttcactcagacgcttctacctttttctttt
1Os07t0479100-02-E117,400,71717,401,103-0387
ATTCCCCCCTTTCTTCTCTAGGTTTTATGGGCTTCATGGTTCATCAGTTTCTTCTATTTT
GTTTGTTCCATTGTTTTTGTATCTTTCCTTCTTGCAAGTTTTAGTTCACAGAATTTTTGG
GTTTTCCAATAAAGAGTAGGTGCATATTAGTCAGCAATTTTTTTATGAAAGCTCTCATTG
GTGTTTTCATCTCTTCTGTTGAATGCAGTGGGCTCATTAGTTGGAGTCTTCATCGGCGCG
TTCATGGGGATGTCCACGGAAAGCGGCATGCTACGAGGCGCAGGCGTCGGGGTGGTCTCC
GGCGCGGTCTTCTCCATCGAGGCCGTCGAATCGTGCATCGAAATCTGGAGATCAAGTGAA
TCAGGAAAATACAGCATTATCTTCGTG                                 
 Intron 1-217,401,10417,401,438335
gtgagtgtgcaagaatccaagaccc..........tgatgtactctgtcggttgtttcag
2Os07t0479100-02-E217,401,43917,401,5220084
CTTGACATCATCTCTAGCCTCTTCAGTGGAAGGATTGTGTGGGAGAAGGTCAGCCCAGCA
CTGCAGCGCGCGGTGCAGAGTCAG                                    
 Intron 2-317,401,52317,402,418896
gtatgcagctcttcctttgagcttt..........tgattcattattctctctaatgcag
3Os07t0479100-02-E317,402,41917,402,58300165
ATGAGTCTACTGAGTACACCATTCATTGACAACAATGACCTTTTTGAAACCGGAAATACA
GGAGGCATGTCAAGAGATCTAATTAACAGAATCCCAAAGACCACATTCAGCGCTGCAACC
AATCCTGATCAGGAAACTGATAACTGTTGTGCAGTTTGCCTTCAG               
 Intron 3-417,402,58417,402,67390
gttagtgtgaacctagaatgctgca..........acgcaccataacttctgattgccag
4Os07t0479100-02-E417,402,67417,403,0540-381
GATTTTGGAGCATCGCAATTTGTTCGGGTCCTGCCTCATTGCCAGCACACGTTCCACGCA
CGATGCATCGACAACTGGCTTTTCAGGCACGCATCATGCCCGCTATGCAGGGCTGGTGTG
CATATAGACCATATACATATGTAAAATAGAACTCGCAGCGCACCTGGTGTATTTTCAGGC
GAATACCCGTGCCCGCGGTCCGTATCATAAGTATAGTCTTGTACACATAGGAGGCCTTTT
TTTCTTCCCAGTCTTTGTGTGGAGCTATGTTCCAGCCGCACGTTTTTTTGTTACAGCAAT
AACAAGTTATGTACTAATATACATTCTGAAAAAAAGAACTAAACTAACAGTCTCTGAATT
ATGGCTGTGTACTGGAGCCTC                                       
3' downstream sequence
aagaactctggtgtgtgcattctgagaatgaactaacaatctctctgaat..........