5' upstream sequence
{"provisional":{"flourishes":{},"seq":[{"style":[1]}],"expect":[],"legend":{"exons/Introns":{"flanking":{"text":"Flanking sequence","default":null,"label":"#008000","class":"ef"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#008000"]]}},"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only"}
..........cccattctcccaccaagatcaaacccgttcgtttcactcccggagaggaa
1 Os06t0301000-01-E1 11,242,796 11,242,585 - - 212
{"provisional":{"flourishes":{},"seq":[{"style":[1]},-2,{"style":[1,-31,0]}],"expect":[],"legend":{"exons/Introns":{"exon1":{"default":null,"label":"#1044ee","class":"e1","text":"Translated sequence"},"utr":{"text":"UTR","default":null,"label":"#cd6839","class":"eu"},"flanking":{"class":"ef","label":"#008000","default":null,"text":"Flanking sequence"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#cd6839"]]}},"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only"}
GAAGAAAAAAACACAAAAACCGAAAAGAAAAGAAAAAAAAAACAACAACAACAAGATTTT TTTTTTCCGCAAACCCTCTCGAACCAAAATCGCGGCGGCTTTATCCACGAATCAAAAAAA ATCCCCGCGACAATGTCTCCGCCCAATCTTTCCTCCTCCTCCTAGAGCCGGAGAATCCAC CCGCCATCACCATCGTGCTCGCAATCGCATCG
Intron 1-2 11,242,584 11,242,432 153
{"provisional":{"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","default":null,"class":"ei","label":"#aaaaaa"},"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null},"exon1":{"default":null,"label":"#1044ee","class":"e1","text":"Translated sequence"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"seq":[{"style":[1]}],"expect":[]},"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only"}
gtaagagcagcttggatctggtcta..........cggtgggtggtgggtggtggtgcag
2 Os06t0301000-01-E2 11,242,431 11,241,866 - 2 566
{"provisional":{"flourishes":{},"seq":[{"style":[2,-32,1]},{"style":[1]},-7,{"style":[1,-25,0]}],"expect":[],"legend":{"exons/Introns":{"intron":{"class":"ei","label":"#aaaaaa","default":null,"text":"Intron sequence"},"flanking":{"label":"#008000","class":"ef","default":null,"text":"Flanking sequence"},"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null},"exon1":{"text":"Translated sequence","class":"e1","label":"#1044ee","default":null}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]}},"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only"}
CCTGTGGCGGGATCGCCGGCGGCGGCGGCGGAG ATGATTCGGCTGCAGACGTACGCGGCG TTCAGCCTGATGGCGACGGCGACGGCGGTGTACTACGCGTTCAGCAGCAGGGAGCAGTTC TACCCGGCGATGGTGTACCTCTCCACCTCCAAGATCTGCTTCGTGCTGCTCCTCAACACG GGCCTCGTCGCCATGTGCGTCGCCTGGCAGCTCGTCAAGCGGCTCTTCCTGGGGACGCTC CGGGAGGCCGAGGTGGAGCGGCTCAACGAGCAGGCGTGGCGGGAGGTGGTGGAGATCCTC TTCGCGGTCACCATCTTCAGGCAGGACTTCTCCGTCTCCTTCCTCGCCATGGTCGCCGCG CTGCTGCTCGTCAAGGCGCTGCACTGGCTCGCGCAGAAGAGGGTCGAGTACATCGAGACC ACGCCCTCCGTGCCCATGCTGTCGCACGCCAGGATCGTCTCCTTCATGCTGTTCCTGCTC GTCGTCGACTGCCTCTTCCTGTCCAACTCGCTCAGGTCGCTCATACACAAGCGGGAGGCG TCTGTTGCAATCTTCTTTTCGTTTGA
Intron 2-3 11,241,865 11,241,268 598
{"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only","provisional":{"flourishes":{},"seq":[{"style":[1]}],"expect":[],"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null},"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"utr":{"label":"#cd6839","class":"eu","default":null,"text":"UTR"},"exon1":{"default":null,"label":"#1044ee","class":"e1","text":"Translated sequence"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}}}
gtaagctccattttctttacttctc..........aataactcaaggatgtgcatatcag
3 Os06t0301000-01-E3 11,241,267 11,241,091 2 2 177
{"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only","provisional":{"expect":[],"flourishes":{},"seq":[{"style":[1]},-1,{"style":[1,-56,0]}],"legend":{"exons/Introns":{"intron":{"label":"#aaaaaa","class":"ei","default":null,"text":"Intron sequence"},"flanking":{"text":"Flanking sequence","default":null,"class":"ef","label":"#008000"},"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"]]}}}
GTACATGATACTAGCAACATCCACAGTATCGACATTCGTGAAATATATATTCTATGTCAG TGACATGCTAATGGAAGGTCAATGGGAGAAAAAGGCAGTGTATACATTTTACTTGGAGCT CATCAGTGACCTTGTACACTTGTCTTTGTATATGCTCTTCTTCATAGCTATCTTCCT
Intron 3-4 11,241,090 11,241,009 82
{"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only","provisional":{"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null},"flanking":{"text":"Flanking sequence","default":null,"class":"ef","label":"#008000"},"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"label":"#1044ee","class":"e1","default":null,"text":"Translated sequence"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"seq":[{"style":[1]}],"expect":[]}}
gtaagttctcttaagatgatatttc..........ttgatcttctatattgatatatcag
4 Os06t0301000-01-E4 11,241,008 11,240,859 2 2 150
{"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only","provisional":{"expect":[],"seq":[{"style":[1]},-1,{"style":[1,-29,0]}],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null},"flanking":{"label":"#008000","class":"ef","default":null,"text":"Flanking sequence"},"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null}},"_messages":[]}}}
GAACTATGGTGTCCCACTGCACTTGATACGTGAGCTGTATGAGACATTTCGCAACTTCAG AATCCGTATCGCGGATTATGTACGCTACAGAAAGATAACTTCCAACATGAATGAAAGATT TCCAGATGCCACAGCAGATGAGCTCAATGC
Intron 4-5 11,240,858 11,240,785 74
{"provisional":{"seq":[{"style":[1]}],"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"exons/Introns":{"intron":{"default":null,"label":"#aaaaaa","class":"ei","text":"Intron sequence"},"flanking":{"text":"Flanking sequence","default":null,"label":"#008000","class":"ef"},"utr":{"text":"UTR","class":"eu","label":"#cd6839","default":null},"exon1":{"text":"Translated sequence","class":"e1","label":"#1044ee","default":null}},"_messages":[]}},"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only"}
gtgagtcttattgaaattttaattc..........ttgtgacttaatcttttatattcag
5 Os06t0301000-01-E5 11,240,784 11,240,582 2 1 203
{"provisional":{"legend":{"exons/Introns":{"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"},"utr":{"text":"UTR","default":null,"class":"eu","label":"#cd6839"},"exon1":{"text":"Translated sequence","default":null,"class":"e1","label":"#1044ee"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"flourishes":{},"seq":[{"style":[1]},-2,{"style":[1,-22,0]}]},"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only"}
GAGTGATGCTACATGTATTATTTGCCGTGAGGAGATGACCACAGCAAAAAAGCTGCTTTG TGGGCACCTGTTCCATGTCCATTGTTTGAGGTCATGGTTAGAACGCCAACACACTTGCCC TACATGTAGAGCTCCAATTCTGCCCCCAGATAATGGGCGTACTGCAGCACGTCCGCATGG AGTTCATCCTGGAGTTCAGCCTG
Intron 5-6 11,240,581 11,240,507 75
{"provisional":{"expect":[],"seq":[{"style":[1]}],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","class":"ei","label":"#aaaaaa","default":null},"flanking":{"text":"Flanking sequence","default":null,"class":"ef","label":"#008000"},"utr":{"text":"UTR","class":"eu","label":"#cd6839","default":null},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"}},"_messages":[]}},"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only"}
gtgactgtctaaacctttttgtatc..........tctaattcaacataataaaaaatag
6 Os06t0301000-01-E6 11,240,506 11,240,365 1 2 142
{"provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","class":"ei","label":"#aaaaaa","default":null},"flanking":{"text":"Flanking sequence","class":"ef","label":"#008000","default":null},"utr":{"class":"eu","label":"#cd6839","default":null,"text":"UTR"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null}},"_messages":[]},"seq":[{"style":[1]},-1,{"style":[1,-21,0]}],"flourishes":{},"expect":[]},"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only"}
TTCCAGGTAATGGCACACCAGGTTCAGAACGAGCAGCAGGTGAGAACATAAGCAGGCGCC AAGCAAAACTTGAAGCAGCTGCTTCGGCTGCTTCCCTATATGGGAGATCCTTTGCTTATC CTCCAGCGAACAATTTGAACAG
Intron 6-7 11,240,364 11,239,090 1,275
{"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only","provisional":{"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","class":"ei","label":"#aaaaaa","default":null},"flanking":{"text":"Flanking sequence","default":null,"class":"ef","label":"#008000"},"utr":{"text":"UTR","class":"eu","label":"#cd6839","default":null},"exon1":{"text":"Translated sequence","default":null,"class":"e1","label":"#1044ee"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"flourishes":{},"seq":[{"style":[1]}]}}
gtactgattctactttttgctggga..........gataagtatcatgtattcaacatag
7 Os06t0301000-01-E7 11,239,089 11,238,882 2 0 208
{"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only","provisional":{"expect":[],"seq":[{"style":[1]},-2,{"style":[1,-27,0]}],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"intron":{"class":"ei","label":"#aaaaaa","default":null,"text":"Intron sequence"},"flanking":{"class":"ef","label":"#008000","default":null,"text":"Flanking sequence"},"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null},"exon1":{"label":"#1044ee","class":"e1","default":null,"text":"Translated sequence"}},"_messages":[]}}}
GTATTCAACTCCTCCACAGTCTACATCAAATGGTCCACAATCAGGAGAAGCAAGTACTTC CAATCAATCGCCAAAAGGCCATGCAACTGCCGATCCTTCAGCGCCTACTTTTTATGCACG TGGTGCTGTTAGTTCAGTGACAACTACCAGGGAACTTGAAAGTTCACTGCAGAAGGCATA TGAAAATGCTATAAAGAGCCAGATAGAG
Intron 7-8 11,238,881 11,237,911 971
{"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"exons/Introns":{"intron":{"default":null,"label":"#aaaaaa","class":"ei","text":"Intron sequence"},"flanking":{"label":"#008000","class":"ef","default":null,"text":"Flanking sequence"},"utr":{"label":"#cd6839","class":"eu","default":null,"text":"UTR"},"exon1":{"label":"#1044ee","class":"e1","default":null,"text":"Translated sequence"}},"_messages":[]},"expect":[],"seq":[{"style":[1]}],"flourishes":{}}}
gtaaggatgcaatttgattcctaaa..........tcataacatcatttcctttttccag
8 Os06t0301000-01-E8 11,237,910 11,237,438 0 - 473
{"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only","provisional":{"legend":{"exons/Introns":{"intron":{"class":"ei","label":"#aaaaaa","default":null,"text":"Intron sequence"},"flanking":{"text":"Flanking sequence","default":null,"label":"#008000","class":"ef"},"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"label":"#1044ee","class":"e1","default":null,"text":"Translated sequence"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"flourishes":{},"seq":[{"style":[1]},{"style":[1,-29,2]},{"style":[2]},-4,{"style":[2,-52,0]}],"expect":[]}}
ATGTTGCAAATCCAGCTGCAAATGTTTCAGCATGGGGCTACTTCATCAGCGACTAACAAT GAAAACGGTGAGCACACAAAAAGCGACTGAAGTTGTAAATAAGGGGAAGGTGAGGGCTGA ACAAACAAAGGATATATAGATGGTGACTTGGCAAATACCCGAGGAGAAACTCCCATGCCA TGCTTTATTTCGATTTTGGTAGGCTCGTTCATTTGTATGTCCATGTTAGAGGCCTCCTAT CAACATCAGATATTTATTTGCTTAATGTGGTCATTTGAGTAGAGATGCAGTGTTGTAACT ACGACTAATTTCAGATTAGCACATCTGGGAAAAAGCAACATGATTCTTCAATCTGAACCA TCAGTATGCTCCCTCTTTTTTCTGGCATTTTTGTTTGTACGCTATAGTTGGATTTATACT GTCCAGACATTCAATACTGAATTTAATAAATGTGAATATGGTTTAAGTCGCTC
3' downstream sequence
{"provisional":{"expect":[],"seq":[{"style":[1]}],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#008000"]]},"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null},"flanking":{"label":"#008000","class":"ef","default":null,"text":"Flanking sequence"},"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null},"exon1":{"default":null,"label":"#1044ee","class":"e1","text":"Translated sequence"}},"_messages":[]}},"url":"/Oryza_sativa/Component/Transcript/Exons/exons?g=Os06g0301000;r=60X0P+011237438-11242796;t=Os06t0301000-01;db=core;time=1743826941045.045;adorn=only"}
ttctgaattcgtgcttcaatattcttttcttaccatcactatgtaaaatc..........
Oryza sativa Japonica Group (IRGSP-1.0) ▼ 
Summary
Sequence![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
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