Oryza sativa Japonica Group (IRGSP-1.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationExternal ReferencesSupporting evidenceID History.
Chromosome 5: 11,320,504-11,327,124 reverse strand.
This transcript has 8 exons, is annotated with 9 domains and features, is associated with 101 variant alleles and maps to 62 oligo probes.
This transcript is a product of gene Os05g0275700 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........ataagggcccatgtcaagtactagtatcaaccgaatccccaatcgcacgc
| ||||||
| 1 | Os05t0275700-01-E1 | 11,327,124 | 11,326,712 | - | 0 | 413 |
ACTTTCCTCGATCGTCCGCGCGACACGCACCGCTGGTCCGCTGCCCGCTGCTCGTCCCAT CCACCCCCGCCTCTCCCACCGCCGGCGACGCGCCGTCCGCCCCTCTCGACCTCTCCCTCC TCCGCGCCGGCCGTCGCGTGCCCCCCCTTAACTACCAGGTGGGGCGGATCGGCCCGCCAC GCTCATCGGCTTCCTTCCCCGGAGGCGGGGATTTCTCGCGTCTGCTGTCGCTTCTCATGC TCGAGCTCGCATCACGCGTCCACCCGTGAGCTCCGCCCCCTATAATGACGGATCCCGAAA CCCTACCCTCTCCCTCCGCCTCCACTGACTCGTCGTCGCCACCACCGGATGCATGGGCCG CCGAGTACCGGAGACTCCTCCCTCAGTGGGAGTCAATGCGTGATTCATCCAAG |
| Intron 1-2 | 11,326,711 | 11,326,323 | 389 |
gtaccgatatgtctaactcacctct..........ttgttgaatttcttgtgtgatacag
| |||
| 2 | Os05t0275700-01-E2 | 11,326,322 | 11,326,209 | 0 | 0 | 114 |
ATCGCTATCCCAATTTCAATATCTAGAGTTAACCAATTTGATGCTGCGAGGCTTGATGTC GAGATGTCCGCCATGTTGAAAGAGCAGTTAGTCAAAGTATTCTCTTTGGTGAAG |
| Intron 2-3 | 11,326,208 | 11,326,123 | 86 |
gtacttcctttactaatcatggtga..........accttcagtttgacatatgttccag
| |||
| 3 | Os05t0275700-01-E3 | 11,326,122 | 11,325,966 | 0 | 1 | 157 |
CCAGGACTCCTGTTCCAATATGAGCCAGAATTAGATGCTTTCCTTGAGTTCCTCATATGG AGATTCTCAATATGGGTTGATAAGCCAACTCCTGGGAATGCGCTCATGAACCTGAGATAT AGAGATGAACGGGCAGCGCCCATAACAGGAAAAGAAG |
| Intron 3-4 | 11,325,965 | 11,323,889 | 2,077 |
gtatttgctactttattgtgtctca..........ttgatgaattccatgtgtttttcag
| |||
| 4 | Os05t0275700-01-E4 | 11,323,888 | 11,323,752 | 1 | 0 | 137 |
TCAGAACAGGTTTGGAAGGACCTGGACTTTCAGTTTCTCAAAAGGTTTTGTATTGTATTA GCACTGTTGGTGGCCAATATATATGGTCCCGCTTGCAGTCTTTTTCTGCTTTCCGTCGAT GGGGTGATTCTGAACAG |
| Intron 4-5 | 11,323,751 | 11,323,682 | 70 |
gtgatcttcagaacttattcgaaaa..........cttataactttctttcataatttag
| |||
| 5 | Os05t0275700-01-E5 | 11,323,681 | 11,323,581 | 0 | 2 | 101 |
AGACCACTAGCACGTCGCGCTTGGGGCTTGGTGCAGCATGCTGAAGGCTTATACAGAGCT TCTTCATTCTTTAACCTTTTGTTATTTCTTTATGGTGCAAG |
| Intron 5-6 | 11,323,580 | 11,323,329 | 252 |
gtactgttcatcaacttgtttattt..........cagacttgcttatgtatttatgcag
| |||
| 6 | Os05t0275700-01-E6 | 11,323,328 | 11,323,211 | 2 | 0 | 118 |
ATATAAAACTATTGTTGAAAGGATTCTGAAAGCAAGACTTGTTTATGAGAGCCCCAACAT GAATAGGGCAGTAAGCTTTGAGTACATGAACCGGCAACTGGTTTGGAATGAATTTTCG |
| Intron 6-7 | 11,323,210 | 11,321,338 | 1,873 |
gtatgcctctcttgatacattcttg..........agttgatatttgctttattgtccag
| |||
| 7 | Os05t0275700-01-E7 | 11,321,337 | 11,321,171 | 0 | 2 | 167 |
GAAATGTTGCTTTTGCTTCTTCCCCTCTTAAACTCATCCTCAGTAAAGAAGTTTCTTCTA CCTTTCTCCAAAGATAAATCAGCAAGTTCTTCTGGCGATGAAGCAGACTGCCCTATATGT CGCTCCAGTCCTAGCATTCCCTTCGAAGCTCTCCCATGTCAACACAG |
| Intron 7-8 | 11,321,170 | 11,320,820 | 351 |
gtgctcttctttctccatctcttat..........tctatatgtcgttttcttttttcag
| |||
| 8 | Os05t0275700-01-E8 | 11,320,819 | 11,320,504 | 2 | - | 316 |
GTATTGCTATTACTGCCTGCAAACACGTTGTGCAGCCACAAACTCGTATAGATGTGCAAG GTGTAATGAGATTGTTGTTGCAATTCAAAGACAAGGATCAAGTTAGTTTAGAGTTGAATC CATATACATACAGTGTAACAAAAGCCAATACAGCTAACTGGATTCGCGACAACTACACAT GATTTTCTCCCAATCAACACGATTGGTTGTATTTACTCGCTGTTATATTTTGAATTCCAT GTTTGTATTATGTGGCAGCCGTATTGGGCGGATCTCTCTCTTATTTTTCGTGCAATATAG TTTTACCTTACAATCC |
| 3' downstream sequence |
tcaggcacggccgtgggcagagatgaagaaggaagaatagaaaaggaaag..........
|
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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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