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    Transcript: Os01t0908200-01 OsBT-201

    Location

    Chromosome 1: 39,544,235-39,548,599 forward strand.

    About this transcript

    This transcript has 5 exons, is annotated with 8 domains and features, is associated with 398 variant alleles and maps to 42 oligo probes.

    Gene

    This transcript is a product of gene Os01g0908200 Show transcript tableHide transcript table

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    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • RefSeq
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
    OsBT-201Os01t0908200-011446347aa
     
    Protein coding
    		A3A0Q7 Q8L3R7 -Ensembl Canonical

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    • UTR
    Markup
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........tggatttctatataaaccttcaaaaacccgcggcaattgccctcagatgc
    1Os01t0908200-01-E139,544,23539,544,463-0229 
    ATAGTACTCGCACGCCGCGACGCCTCTGCTGAACATTTCGCTCTCTTCCAAGATATTTTT
TCCTCCCACGATTCCTTCCTCCCATCCCTGTGGGGATTCATCGGCTCATCCGTACTAGCA
CAAGATGTGCGAGGGTGTGCGGGCCGCCGGCGACGCCGCCGCCGCCGCCGACGTCGACGT
CATCACCTCCTCCGGCCGCCGGAGGATCCCCGCGCATTCCACTGTTCTT
     Intron 1-239,544,46439,544,605142 
    gtaagcttctcctctttcatcagca..........tttgtttgtttggtttgatcaccag
    2Os01t0908200-01-E239,544,60639,544,76902164 
    GCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAGGAGAGGGAC
GCCGCCGCCGGCGGCGGCAAGGTCCGCAGGGCCGTCGTCCTGATCCGCGGCGTCACCGAC
GACGCCGCGGCCGCCTTCGTCCGCCTCCTCTACGCCGGCAGCAG
     Intron 2-339,544,77039,546,5361,767 
    gtaccgtgccctcgtccattccatt..........taaattttgttaactaattgtgcag
    3Os01t0908200-01-E339,546,53739,546,84320307 
    TGGTGATGAGGAGGAGATTGACGAGAAGAGCGCGGCGCAGATGCTGGTGCTGGCGCACGC
GTACCGGGTGCCGTGGCTGAAGCGGCGGTGCGAGGGGGCGATCGGGTCGCGGCTCACGGC
GGAGTCGGTGGTGGACACGATGCAGCTGGCGGCGCTGTGCGACGCGCCGCAGCTGCACCT
GCGCTGCACCAGGCTGCTCGCCAAGGAGTTCAAGGCCGTGGAGAAGACCGAGGCGTGGCG
ATTCCTCCAGGAGAACGACCCCTGGCTCGAGCTCGACATCCTCCAGCGCCTCCACGACGC
CGACCTG
     Intron 3-439,546,84439,547,654811 
    gtatacatcattatcgctgttcatc..........tctccggtgtgattgaatggtgcag
    4Os01t0908200-01-E439,547,65539,547,96202308 
    CGGCGGAGGAAGTGGAGGAGGAAGAGGGCGGAGCAAGGGGTCTACGTGGAGCTGAGCGAG
GCGATGGACTGCCTGAGCCACATCTGCACGGAGGGGTGCACGGAGGTCGGGCCGGTGGGG
CGTGCGCCGGCGGCGGCGCCGTGCCCGGCGTACGCGACGGCGTGCCGGGGACTGCAGCTG
CTGATCCGCCACTTCTCCCGGTGCCACCGCACCAGCTGCCCGCGCTGCCAGCGCATGTGG
CAGCTGCTCCGCCTCCACGCCGCCCTCTGCGACCTCCCCGACGGCCACTGCAACACCCCT
CTCTGCAT
     Intron 4-539,547,96339,548,161199 
    gtgagtgatcacaatgtcacactca..........aaaatctttgcattgtgtattgcag
    5Os01t0908200-01-E539,548,16239,548,5992-438 
    GCAGTTCAGGAGAAAGGAGGAGGAGAAGGCGGCAGCGAAGGCGAAGGCAAAGGCCGGCGA
TGATGACGATAAGTGGGGGCTTCTGGTGAAGAAGGTGAGGGTTGCCAGGGCCATGTCTTC
TCTGGGCAAGAGGAGGCAGATGAGTTGCTCCCAGTGCTGAGCAAGTGCAATCACAGCATC
AGCCTGAGACAGTCAAGAGAAGAGTATTGTAGTATAGAAGGGTACTACTATGTAGTTAGG
CATAGTGCATGAGTGTATTGAAGTGAGCTATTTTTTGGTTTGTTCAAGATGGTTTGGTCT
CTCAAGTTTGAGTTGCTTTACTGTCTTCAATTTGTAGAGTTCTTTTGTGAGGTGAGAGAA
ATGGGCTGAAATCTGTTGTAAAATTGCCTATATCGTAAATAAACTTTTAATAGTGAGGTA
TATGATCATTACAGTTTC
    3' downstream sequence 
    atacctggatgattacattgatagactttttatgcccttcccttggaagc..........

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