Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: Os07t0435400-01 OsWD40-143-202

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Description

BOP1 ribosomal biosis factor [Source:UniProtKB Gene Name;Acc:Q0D6V7]

Location

Chromosome 7: 14,534,613-14,541,912 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 22 domains and features and is associated with 1321 variant alleles.

Gene

This transcript is a product of gene Os07g0435400 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
OsWD40-143-202	Os07t0435400-01	2590	678aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0D6V7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
OsWD40-143-201	Os07t0435400-02	423	No protein	A non-coding gene.ncRNA	-	-	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	341	378	-	PS50294	-
Pfam	78	334	BOP1, N-terminal domain	PF08145	IPR012953 [Display all genes with this domain]
SMART	78	334	BOP1, N-terminal domain	SM01035	IPR012953 [Display all genes with this domain]
HAMAP	1	677	WD repeat BOP1/Erb1	MF_03027	IPR028598 [Display all genes with this domain]
PANTHER	25	677	WD repeat BOP1/Erb1	PTHR17605	IPR028598 [Display all genes with this domain]
SMART	334	373	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	336	372	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	341	382	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	376	415	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	540	579	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	553	579	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	583	622	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	586	621	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	634	677	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	637	676	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE patterns	360	374	WD40 repeat, conserved site	PS00678	IPR019775 [Display all genes with this domain]
Superfamily	299	676	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	324	678	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	10
MobiDBLite	1	73
MobiDBLite	24	63
Alphafold	1	678

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