Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: Os06t0131100-02 OsWD40-124-202

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Location

Chromosome 6: 1,648,617-1,654,151 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 16 domains and features, is associated with 191 variant alleles and maps to 69 oligo probes.

Gene

This transcript is a product of gene Os06g0131100 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
OsWD40-124-202	Os06t0131100-02	1567	392aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0DEW5 Q5VSA6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
OsWD40-124-201	Os06t0131100-01	3436	119aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0P0WS42	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	23	55	-	PS50294	-
PANTHER	23	374	-	PTHR19854	-
PROSITE profiles	340	373	-	PS50294	-
SMART	16	55	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	19	55	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	23	64	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	58	100	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	245	284	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	291	330	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	333	372	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	336	371	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	340	373	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
PROSITE patterns	359	373	WD40 repeat, conserved site	PS00678	IPR019775 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
Alphafold	1	392
Alphafold	1	392
Alphafold	1	392

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