Oryza rufipogon (OR_W1943) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 6: 1,825,354-1,832,484 forward strand.
This transcript has 9 exons, is annotated with 25 domains and features and maps to 67 oligo probes.
This transcript is a product of gene ORUFI06G02420 Show transcript tableHide transcript table
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1 CCGGCCCATGTTAACAAATCACGAGGCTGACTAGGGCCAACAATTCCATCCGCCCCACCT 60 ............................................................ ............................................................ 61 TGGGCCCACATCCTGCAGGGCGAAGTCTTCCGGCCCAGGAAATGGCCCATCCCATCCGGC 120 ............................................................ ............................................................ 121 CCACAGGGTCGGAAGGTGAAGGGAAGAAGAGATGCGGGGCAAAAAAAAAGGAAAAAAAAT 180 ...............................ATGCGGGGCAAAAAAAAAGGAAAAAAAAT 29 ...............................-M--R--G--K--K--K--G--K--K--I 10 181 AAAAAAAAAGATTCCGTCGAGTCGAGGCGCCGGTGGTTTCGCCTTTTTCGCTCGCAGACG 240 30 AAAAAAAAAGATTCCGTCGAGTCGAGGCGCCGGTGGTTTCGCCTTTTTCGCTCGCAGACG 89 10 --K--K--K--I--P--S--S--R--G--A--G--G--F--A--F--F--A--R--R--R 30 241 GCCGCCGGCGACGCGCGTGGCGGCGAGCCCTAGATATGGTGCCGGGAGGGCCCCGGGGAC 300 90 GCCGCCGGCGACGCGCGTGGCGGCGAGCCCTAGATATGGTGCCGGGAGGGCCCCGGGGAC 149 30 --P--P--A--T--R--V--A--A--S--P--R--Y--G--A--G--R--A--P--G--T 50 301 GGAGGTGGACGCGTTCCGGCGCCAGGTCGAGGACCTCGTCTCCAAGACCGACCAGCTGGA 360 150 GGAGGTGGACGCGTTCCGGCGCCAGGTCGAGGACCTCGTCTCCAAGACCGACCAGCTGGA 209 50 --E--V--D--A--F--R--R--Q--V--E--D--L--V--S--K--T--D--Q--L--E 70 361 GAGGAGGGTGAATGAAGTGGTGGGATTCTACGACGGGAAGAAACATGGCAGTGGTGGCCG 420 210 GAGGAGGGTGAATGAAGTGGTGGGATTCTACGACGGGAAGAAACATGGCAGTGGTGGCCG 269 70 --R--R--V--N--E--V--V--G--F--Y--D--G--K--K--H--G--S--G--G--R 90 421 GAAGGCTGGTCGCAAGGATAGCAGCCTTTCCAAAGGGATGCCTGATCTTATGCGCCAGTT 480 270 GAAGGCTGGTCGCAAGGATAGCAGCCTTTCCAAAGGGATGCCTGATCTTATGCGCCAGTT 329 90 --K--A--G--R--K--D--S--S--L--S--K--G--M--P--D--L--M--R--Q--F 110 481 TGGCACGATTGTGCGCCAGATCACATCTCATGAATGGGCCGAGCCATTTCTCAAGCCGGT 540 330 TGGCACGATTGTGCGCCAGATCACATCTCATGAATGGGCCGAGCCATTTCTCAAGCCGGT 389 110 --G--T--I--V--R--Q--I--T--S--H--E--W--A--E--P--F--L--K--P--V 130 541 TGATGTGGTAGGCCTTCAGCTTGATGACTATTACAAGATTATCACCAAACCTATGGATTT 600 390 TGATGTGGTAGGCCTTCAGCTTGATGACTATTACAAGATTATCACCAAACCTATGGATTT 449 130 --D--V--V--G--L--Q--L--D--D--Y--Y--K--I--I--T--K--P--M--D--F 150 601 TTCGACCATACAAAAGAAAATGGAAGGGAAAGATGACAACAAGTATAACAATGTCCGAGA 660 450 TTCGACCATACAAAAGAAAATGGAAGGGAAAGATGACAACAAGTATAACAATGTCCGAGA 509 150 --S--T--I--Q--K--K--M--E--G--K--D--D--N--K--Y--N--N--V--R--E 170 661 AATATATTCGGATGTTAGATTAATTTTTGCCAATGCAATGAAGTACAATGATGAACGACA 720 510 AATATATTCGGATGTTAGATTAATTTTTGCCAATGCAATGAAGTACAATGATGAACGACA 569 170 --I--Y--S--D--V--R--L--I--F--A--N--A--M--K--Y--N--D--E--R--H 190 721 TGATGTTCATATAATGGCGAAATCATTGCTTGAGAAATTTGAAGAGAAATGGCTCCAGCT 780 570 TGATGTTCATATAATGGCGAAATCATTGCTTGAGAAATTTGAAGAGAAATGGCTCCAGCT 629 190 --D--V--H--I--M--A--K--S--L--L--E--K--F--E--E--K--W--L--Q--L 210 781 TCTTCCTAAAGTTGAAAATGAGGAAAGGAAACAAAAGGATGAGGAATCCAACGGTGTTCC 840 630 TCTTCCTAAAGTTGAAAATGAGGAAAGGAAACAAAAGGATGAGGAATCCAACGGTGTTCC 689 210 --L--P--K--V--E--N--E--E--R--K--Q--K--D--E--E--S--N--G--V--P 230 841 AAAAGTGAACATTTCTCCAGAAGAAGCTATTGCAAAACTAGCAAAAGATACTGACAATGA 900 690 AAAAGTGAACATTTCTCCAGAAGAAGCTATTGCAAAACTAGCAAAAGATACTGACAATGA 749 230 --K--V--N--I--S--P--E--E--A--I--A--K--L--A--K--D--T--D--N--E 250 901 GCTGATTGAAATCAACAAGCAGTTGGAGGAGCTTCGGCAAATGGTGGTCCAGAAATGCCG 960 750 GCTGATTGAAATCAACAAGCAGTTGGAGGAGCTTCGGCAAATGGTGGTCCAGAAATGCCG 809 250 --L--I--E--I--N--K--Q--L--E--E--L--R--Q--M--V--V--Q--K--C--R 270 961 GAAAATGACTACATATGAGAAAAGAAAACTGGGTGCAGGTCTCTGCCACCTGTCTCCAGA 1020 810 GAAAATGACTACATATGAGAAAAGAAAACTGGGTGCAGGTCTCTGCCACCTGTCTCCAGA 869 270 --K--M--T--T--Y--E--K--R--K--L--G--A--G--L--C--H--L--S--P--E 290 1021 AGAGCTTACTAAGGCATTGGAGATGGTTGCACAAGACAACCCTAGCTTCGAAGCTAAAGG 1080 870 AGAGCTTACTAAGGCATTGGAGATGGTTGCACAAGACAACCCTAGCTTCGAAGCTAAAGG 929 290 --E--L--T--K--A--L--E--M--V--A--Q--D--N--P--S--F--E--A--K--G 310 1081 AGACGAACTGGAACTTGATATGGATGCTCAGAGTGAGACAACCCTCTGGAGGTTGAAATT 1140 930 AGACGAACTGGAACTTGATATGGATGCTCAGAGTGAGACAACCCTCTGGAGGTTGAAATT 989 310 --D--E--L--E--L--D--M--D--A--Q--S--E--T--T--L--W--R--L--K--F 330 1141 CTTTGTGAGGGAAGCATTGGAACGACAGGCCAACGTCGCTTCTGGCAGGACTGATGAAAA 1200 990 CTTTGTGAGGGAAGCATTGGAACGACAGGCCAACGTCGCTTCTGGCAGGACTGATGAAAA 1049 330 --F--V--R--E--A--L--E--R--Q--A--N--V--A--S--G--R--T--D--E--N 350 1201 TGCGAAAAGAAAGAGGGAGATATGCAATGCTCTGGCCAGAACTGCTTCAAAAAGAGTCAA 1260 1050 TGCGAAAAGAAAGAGGGAGATATGCAATGCTCTGGCCAGAACTGCTTCAAAAAGAGTCAA 1109 350 --A--K--R--K--R--E--I--C--N--A--L--A--R--T--A--S--K--R--V--K 370 1261 GCAGCAACCTAATTAGTGGCCTCTGACCATTGTGCATTTGTGTCTTCACTTGTTGTTTAG 1320 1110 GCAGCAACCTAATTAG............................................ 1125 370 --Q--Q--P--N--*-............................................ 374 1321 AATGTTTCTGAGAAATAGCCTTGCAAAATAATCTCTTCCTTCTATGGAGCATGTAAATAA 1380 ............................................................ ............................................................ 1381 CTAGTCTCTGCTTAGCTGTGTGAGGTTGCAACAATAGCGAAATGTTTCCCAAAAAAAGGG 1440 ............................................................ ............................................................ 1441 TCTTATGTTCCACCTGTAGATTGTGTGTTCCATGCAATTGTACCATCAAGAAAAATCTAG 1500 ............................................................ ............................................................ 1501 TATAGCGTTGCTGGCGCCATTTCACTGTGGCCATTAGCCCATTACTCATTCCGAAGAGCA 1560 ............................................................ ............................................................ 1561 AACTGTGAAAAAAAATCCATAAGAACAAAATGTGATTTTTGTTTTCAAAAGAATGAACAA 1620 ............................................................ ............................................................ 1621 TTCTTAGCATTCCATGGGAATAAGTGTTTTTGATTAAGAATGTAATGAATCCACATCATA 1680 ............................................................ ............................................................ 1681 TATTTTTACACATAAAAGAGCCAGAGTAACAATATACAATTTCGGCACCTGTTCTGTAAG 1740 ............................................................ ............................................................ 1741 AACCAATCATAAATTCAGGATTTCAGGTCACATCACACAACTCGAAAGTTTGGATATACA 1800 ............................................................ ............................................................ 1801 TGCAGATTCTATTAGAGAGATCTCAAAATGAGCAGAGGAGGACATGAACGCTAATTAGTG 1860 ............................................................ ............................................................ 1861 ATTGCTGCGACCAAGGAATGACCACAACCAGTCATCTGGACAAGATTTGCGGCAAAATCA 1920 ............................................................ ............................................................ 1921 TGCACAATTGGATAATGATATATTAATATGTAAAACCCAGGAACACCGAGCTAAATGTCT 1980 ............................................................ ............................................................ 1981 CTTAGGATGGGCCATCCTTTCTTAGCAATCTCATCAATCTTGGAGTTTATTCTGTTCTGG 2040 ............................................................ ............................................................ 2041 GTATTTGGGGAGCAGAGCTCAGCAGCGTATGCATTCAACTTTGCAGCTAGTGTTGAGGTC 2100 ............................................................ ............................................................ 2101 AGGAGCTCCTCCTCGGGCAGGTTCCCAATCAGTTGCAGGAGAAACGGCTTGCGCTTCAGC 2160 ............................................................ ............................................................ 2161 TCAAATTTCTACCAAAGTACAAGCAATAACTAAAAGGAAATAAAACATAGAATGTCATGG 2220 ............................................................ ............................................................ 2221 TGAGTTCGAATTTTCAGATGGGATTGCTACCTGATGTTCCGGTTCAGCCGGATAAAATGC 2280 ............................................................ ............................................................ 2281 ACCTATTGGTTGGATCTGTGTGGTAATGACACTGCGGCGATCCTTAGCTTGTTCTTTTTC 2340 ............................................................ ............................................................ 2341 TTTGCTAAGACCAGCCAATCTAGCTTCCACGGATCCATTTGTGAAGATGATGGATCTGTG 2400 ............................................................ ............................................................ 2401 ACCACATAAGTGAAGCAAGAATTAAAATTGACGCATTACAGTGCTGTCTGAGGATCCTAT 2460 ............................................................ ............................................................ 2461 CAAACTAGTGAGAATGACAGCTACACCATTCAGTGACCAATTATTTCCTAAGCCATGATG 2520 ............................................................ ............................................................ 2521 GCAACATTTTGTACACAAAGGTACTTGTTTGAAGTAGGATAGACAAAGGTGATGAAATGA 2580 ............................................................ ............................................................ 2581 AATGTACACCTTTCAATTCTCAATTGCTTTGTTGTGAAACTTAGCAAATACCATATGCTA 2640 ............................................................ ............................................................ 2641 AATGCTGGTATGGAAACCAGTCTAAGTTTTAGCATGAAACATGTTTATAAAAGATAATCA 2700 ............................................................ ............................................................ 2701 CATCATTAGTATATAAATCTGACTATGGTAAACTGTGAACAAAAAGATCTATTGCACAAA 2760 ............................................................ ............................................................ 2761 AGGGGTTAGGTTTAGAAAACTCAAGCACCTGTATTGGTTGCCAACATCTGGTCCTTGCCC 2820 ............................................................ ............................................................ 2821 AAAGACCTCTCGTGGATCATGACTTGCCCAGAAGACCTCTAGAAGTTTCTTGTACTGAAT 2880 ............................................................ ............................................................ 2881 CAACCGGGGATCATATTCAACCTAAATGACTCAAAAATGTCAATCATCTTAGCTCATAAA 2940 ............................................................ ............................................................ 2941 ACACCAACAAAGTTAGTTTAGAAGGAGGCCCTGCAAAGTATTAATACCAGTATACCACTC 3000 ............................................................ ............................................................ 3001 CAAAACCTACAACACACACACACATGCAATTGAATGAAGCACTCAACGGACAAACATCTC 3060 ............................................................ ............................................................ 3061 CGATTGTTTTATGCACAAAAAAATACACACAAGAAGCAGATCTGGCAGTGATGAATCGTT 3120 ............................................................ ............................................................ 3121 CCTGTTTGACCATAGAACATTCCTTCTAGTTTTTTTAGGTAATGATACCTCATTAAGCAA 3180 ............................................................ ............................................................ 3181 TGAAAATGAAACTTGGAACCAAGAGAAAACAGATTACGATGGAAATGAAAACTCGCGAGT 3240 ............................................................ ............................................................ 3241 ATTTTCTTTCAGTTTTTAACTTACACATACGAAATGGTAATGGCCAATCAGATTACGATG 3300 ............................................................ ............................................................ 3301 CTAACTACGGAAATGAATTGCTACGACCATGGAACTGAACATATCATTGGTTCATGGTAT 3360 ............................................................ ............................................................ 3361 CGATCAAGAACAGCTAAAAGCGTGGGAGTCTCCGCACCGCACCTTGACGCACTCGGCGTG 3420 ............................................................ ............................................................ 3421 GTCGCCGAGGTTGCGGTACTCAGGGCGGGCCTTGGACCCGCCGGCGTAGCCGACGGAGGT 3480 ............................................................ ............................................................ 3481 GCGGATCACGCCGGGGAGGCACCCGAACGCGGCCTCCGACCTCCAGAAGCTTCCCAGCGC 3540 ............................................................ ............................................................ 3541 GAACACCGCCGTCTCCGTGGCCACCGCCGCCGCCGCCGCTCCCCCGCGCGGCTCCCGCCC 3600 ............................................................ ............................................................ 3601 CCGGTTACCCCCGCTCCCGCCCGGAAGACGCGCCCCCGACGCCACCCCCACGAGGAGGAG 3660 ............................................................ ............................................................ 3661 AAGCACCCACACAACTCCGGCGATCGCCGCGGCGGCGGATCCGCGTGCCATCTCGCCGGT 3720 ............................................................ ............................................................ 3721 GGGGGATCCGAATCGGAGTCAGGTTACGCGTCCATTTCATCTCGAGATTTTTCTCCTCTT 3780 ............................................................ ............................................................ 3781 CTCCTCGCTGAGTCCGATCCTGACCGTCCG 3810 .............................. ..............................
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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