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A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
[["rect",[150,5,297,10],{"title":"Exon: ORUFI07G03180.1.exon1; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 1 ; Last aa: 249 ; Start phase: 0; End phase: 2; Length: 747bp, 249 aa"}],["rect",[296,5,347,10],{"title":"Exon: ORUFI07G03180.1.exon2; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 250 ; Last aa: 334 ; Start phase: 0; End phase: 2; Length: 255bp, 85 aa"}],["rect",[346,5,389,10],{"title":"Exon: ORUFI07G03180.1.exon3; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 335 ; Last aa: 405 ; Start phase: 0; End phase: 2; Length: 213bp, 71 aa"}],["rect",[387,5,415,10],{"title":"Exon: ORUFI07G03180.1.exon4; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 406 ; Last aa: 449 ; Start phase: 0; End phase: 2; Length: 132bp, 44 aa"}],["rect",[413,5,440,10],{"title":"Exon: ORUFI07G03180.1.exon5; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 450 ; Last aa: 493 (1st base); Start phase: 0; End phase: 0; Length: 130bp, 43 1/3 aa"}],["rect",[438,5,449,10],{"title":"Exon: ORUFI07G03180.1.exon6; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 493 (2nd base); Last aa: 508 ; Start phase: 1; End phase: 2; Length: 47bp, 15 2/3 aa"}],["rect",[448,5,469,10],{"title":"Exon: ORUFI07G03180.1.exon7; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 509 ; Last aa: 542 ; Start phase: 0; End phase: 2; Length: 102bp, 34 aa"}],["rect",[468,5,490,10],{"title":"Exon: ORUFI07G03180.1.exon8; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 543 ; Last aa: 578 ; Start phase: 0; End phase: 2; Length: 108bp, 36 aa"}],["rect",[489,5,518,10],{"title":"Exon: ORUFI07G03180.1.exon9; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 579 ; Last aa: 626 (2nd base); Start phase: 0; End phase: 1; Length: 143bp, 47 2/3 aa"}],["rect",[517,5,537,10],{"title":"Exon: ORUFI07G03180.1.exon10; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 626 (3rd base); Last aa: 658 (1st base); Start phase: 2; End phase: 0; Length: 95bp, 31 2/3 aa"}],["rect",[535,5,553,10],{"title":"Exon: ORUFI07G03180.1.exon11; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 658 (2nd base); Last aa: 685 (2nd base); Start phase: 1; End phase: 1; Length: 82bp, 27 1/3 aa"}],["rect",[551,5,563,10],{"title":"Exon: ORUFI07G03180.1.exon12; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 685 (3rd base); Last aa: 702 ; Start phase: 2; End phase: 2; Length: 52bp, 17 1/3 aa"}],["rect",[562,5,579,10],{"title":"Exon: ORUFI07G03180.1.exon13; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 703 ; Last aa: 729 ; Start phase: 0; End phase: 2; Length: 81bp, 27 aa"}],["rect",[578,5,599,10],{"title":"Exon: ORUFI07G03180.1.exon15; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 730 ; Last aa: 764 (2nd base); Start phase: 0; End phase: 1; Length: 104bp, 34 2/3 aa"}],["rect",[598,5,689,10],{"title":"Exon: ORUFI07G03180.1.exon16; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 764 (3rd base); Last aa: 916 ; Start phase: 2; End phase: 2; Length: 457bp, 152 1/3 aa"}],["rect",[687,5,696,10],{"title":"Exon: ORUFI07G03180.1.exon17; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 917 ; Last aa: 928 ; Start phase: 0; End phase: 2; Length: 36bp, 12 aa"}],["rect",[694,5,737,10],{"title":"Exon: ORUFI07G03180.1.exon18; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 929 ; Last aa: 998 (1st base); Start phase: 0; End phase: 0; Length: 208bp, 69 1/3 aa"}],["rect",[735,5,763,10],{"title":"Exon: ORUFI07G03180.1.exon19; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 998 (2nd base); Last aa: 1042 ; Start phase: 1; End phase: 2; Length: 134bp, 44 2/3 aa"}],["rect",[761,5,799,10],{"title":"Exon: ORUFI07G03180.1.exon20; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 1043 ; Last aa: 1105 (1st base); Start phase: 0; End phase: 0; Length: 187bp, 62 1/3 aa"}],["rect",[798,5,835,10],{"title":"Exon: ORUFI07G03180.2.exon21; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 1105 (2nd base); Last aa: 1164 ; Start phase: 1; End phase: 2; Length: 179bp, 59 2/3 aa"}],["rect",[833,5,853,10],{"title":"Exon: ORUFI07G03180.1.exon22; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 1165 ; Last aa: 1196 ; Start phase: 0; End phase: 2; Length: 96bp, 32 aa"}],["rect",[852,5,872,10],{"title":"Exon: ORUFI07G03180.1.exon23; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 1197 ; Last aa: 1227 ; Start phase: 0; End phase: 2; Length: 93bp, 31 aa"}],["rect",[870,5,878,10],{"title":"Exon: ORUFI07G03180.1.exon24; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 1228 ; Last aa: 1238 ; Start phase: 0; End phase: 2; Length: 33bp, 11 aa"}],["rect",[876,5,902,10],{"title":"Exon: ORUFI07G03180.1.exon25; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 1239 ; Last aa: 1279 ; Start phase: 0; End phase: 2; Length: 123bp, 41 aa"}],["rect",[901,5,914,10],{"title":"Exon: ORUFI07G03180.1.exon26; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 1280 ; Last aa: 1300 (1st base); Start phase: 0; End phase: 0; Length: 61bp, 20 1/3 aa"}],["rect",[912,5,925,10],{"title":"Exon: ORUFI07G03180.1.exon27; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 1300 (2nd base); Last aa: 1318 ; Start phase: 1; End phase: 2; Length: 56bp, 18 2/3 aa"}],["rect",[923,5,936,10],{"title":"Exon: ORUFI07G03180.1.exon28; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 1319 ; Last aa: 1337 ; Start phase: 0; End phase: 2; Length: 57bp, 19 aa"}],["rect",[935,5,960,10],{"title":"Exon: ORUFI07G03180.1.exon29; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 1338 ; Last aa: 1378 (1st base); Start phase: 0; End phase: 0; Length: 121bp, 40 1/3 aa"}],["rect",[958,5,997,10],{"title":"Exon: ORUFI07G03180.1.exon30; Location: <a href=\"/Oryza_rufipogon/Location/View?db=core;g=ORUFI07G03180;r=7:2653002-2662610;t=ORUFI07G03180.4\">7:2653002-2662610</a>; First aa: 1378 (2nd base); Last aa: 1440 ; Start phase: 1; End phase: 2; Length: 188bp, 62 2/3 aa"}],["rect",[15,5,106,14],{"alt":"Oryza rufipogon (Oryza rufipogon)","klass":["label","RPKRJXyO"]}],["rect",[792,15,804,20],{"title":"Phobius; Position: 1094-1113"}],["rect",[804,15,996,20],{"title":"Phobius; Position: 1114-1439"}],["rect",[150,15,792,20],{"title":"Phobius; Position: 1-1093"}],["rect",[15,15,58,29],{"alt":"Oryza rufipogon (Oryza rufipogon)","klass":["label","GUFmff2o"]}],["rect",[972,31,983,36],{"title":"MobiDB lite; Position: 1401-1417"}],["rect",[615,31,641,36],{"title":"MobiDB lite; Position: 792-836"}],["rect",[986,31,996,36],{"title":"MobiDB lite; Position: 1424-1439"}],["rect",[155,31,165,36],{"title":"MobiDB lite; Position: 10-25"}],["rect",[650,31,659,36],{"title":"MobiDB lite; Position: 852-866"}],["rect",[165,31,175,36],{"title":"MobiDB lite; Position: 26-42"}],["rect",[150,31,175,36],{"title":"MobiDB lite; Position: 1-42"}],["rect",[622,31,629,36],{"title":"MobiDB lite; Position: 805-815"}],["rect",[633,31,641,36],{"title":"MobiDB lite; Position: 823-836"}],["rect",[650,31,663,36],{"title":"MobiDB lite; Position: 852-872"}],["rect",[969,31,996,36],{"title":"MobiDB lite; Position: 1395-1439"}],["rect",[15,31,82,45],{"alt":"Oryza rufipogon (Oryza rufipogon)","klass":["label","7fP6ASKk"]}],["rect",[982,47,993,52],{"title":"Low complexity (Seg); Position: 1417-1435"}],["rect",[327,47,335,52],{"title":"Low complexity (Seg); Position: 302-315"}],["rect",[593,47,605,52],{"title":"Low complexity (Seg); Position: 756-774"}],["rect",[226,47,235,52],{"title":"Low complexity (Seg); Position: 131-144"}],["rect",[286,47,293,52],{"title":"Low complexity (Seg); Position: 232-243"}],["rect",[154,47,179,52],{"title":"Low complexity (Seg); Position: 8-48"}],["rect",[187,47,209,52],{"title":"Low complexity (Seg); Position: 64-100"}],["rect",[15,47,136,61],{"klass":["label","iUuWH9L1"],"alt":"Oryza rufipogon (Oryza rufipogon)"}],["rect",[266,63,492,77],{"href":"/Oryza_rufipogon/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=ORUFI07G03180;pf_id=20112972;r=7:2653002-2662610;t=ORUFI07G03180.4;track=domain_superfamily;translation_id=29501","title":"Superfamily SSF48371; Positions: 198-581; Interpro: IPR016024; Armadillo-type fold"}],["rect",[15,63,82,77],{"klass":["label","PUbCMjhu"],"alt":"Oryza rufipogon (Oryza rufipogon)"}],["rect",[216,85,976,99],{"title":"Pfam PF14631; Positions: 114-1406; Interpro: IPR029448; Fanconi anaemia protein FANCD2","href":"/Oryza_rufipogon/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=ORUFI07G03180;pf_id=20310248;r=7:2653002-2662610;t=ORUFI07G03180.4;track=domain_pfam;translation_id=29501"}],["rect",[15,85,40,99],{"klass":["label","RunGKWxM"],"alt":"Oryza rufipogon (Oryza rufipogon)"}],["rect",[162,107,579,121],{"href":"/Oryza_rufipogon/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=ORUFI07G03180;pf_id=19801065;r=7:2653002-2662610;t=ORUFI07G03180.4;track=domain_hmmpanther;translation_id=29501","title":"PANTHER PTHR32086; Positions: 21-729; Interpro: IPR029448; Fanconi anaemia protein FANCD2"}],["rect",[15,107,58,121],{"alt":"Oryza rufipogon (Oryza rufipogon)","klass":["label","IDYeXxDz"]}],["rect",[205,129,969,143],{"title":"CDD cd11721; Positions: 95-1394; Interpro: IPR029448; Fanconi anaemia protein FANCD2","href":"/Oryza_rufipogon/ZMenu/Transcript/ProteinSummary?config=protview;db=core;g=ORUFI07G03180;pf_id=20112967;r=7:2653002-2662610;t=ORUFI07G03180.4;track=domain_cdd;translation_id=29501"}],["rect",[15,129,34,143],{"alt":"Oryza rufipogon (Oryza rufipogon)","klass":["label","nxYw69xY"]}],["rect",[15,151,70,165],{"klass":["label","oAMhXAVV"],"alt":"Oryza rufipogon (Oryza rufipogon)"}]]
TIGRFAM
Protein domains and motifs from the TIGRFAM database.
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AFDB-ENSP mappings
Protein features that represent the mapping between Ensembl proteins (ENSP) and AlphaFoldDB protein structures (including their corresponding chains). Imported via UniProt mappings
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