Oryza rufipogon (OR_W1943)
Location
About this transcript

This transcript has 17 exons, is annotated with 22 domains and features and maps to 18 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORUFI11G12510.11517504aa
 
Protein coding
A0A0E0R7S7 Ensembl Canonical
-ORUFI11G12510.21436477aa
 
Protein coding
A0A0E0R7S8 -
-ORUFI11G12510.31091362aa
 
Protein coding
A0A0E0R7S9 -
-ORUFI11G12510.41004333aa
 
Protein coding
A0A0E0R7T0 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........gctcccccaatcccaccctactcccgcgtcctccgccctgctgccctcca
1ORUFI11G12510.1.exon113,406,84713,406,7880060
ATGACCTCGCCGGGCGCCTCCTCTTTCGCCGCCGCGCTCGTCGTCGAGGACTTCCCGTGG
 Intron 1-213,406,78713,406,69197
gtatgtcaacttcgctcctttcacc..........ttggtggtggctgcgcaaggtgaag
2ORUFI11G12510.1.exon213,406,69013,406,5920099
AGGGAGGAGGAGATGGGGATGGACCCGGACAAGTACCGCGAGGTGTTCGACCTCGCGCAG
CGCGGTGCTCGCGCCTTCCGCGACGGCCACTTCGACGAG                     
 Intron 2-313,406,59113,404,9711,621
gtaagcagttagctgagcgaccgtg..........gatacttggtatggtcctgtttcag
3ORUFI11G12510.1.exon313,404,97013,404,8880283
GCAATTTCCTTTTACTCTAAAGCACAAACTTTGAGACCAGGAGATCCCATTATCCTTAGC
AACCGAAGTTCTGCTTTCTGTAT                                     
 Intron 3-413,404,88713,404,725163
gtgagttctctgtcactgtcttttt..........ggctaactggttacctctattacag
4ORUFI11G12510.1.exon413,404,72413,404,6402085
GATAAGTCAAGTGTTGAGGGAGAGATCAGCAGCTGACTCAGAGTACCAACCATTGAATGG
TCTTGATCCCACAACGCATGCGGAG                                   
 Intron 4-513,404,63913,404,538102
gtataagttgttatgcaaatattag..........caatgttcttatgcattcactgcag
5ORUFI11G12510.1.exon513,404,53713,404,4510087
TTAGCGCTCAAAGATGCAGAGAAGGTATTAGCTATCGGCAGTAATTCTCCAAGACCATAT
CTTCTCAAGGCATATGCGCTTATCCTG                                 
 Intron 5-613,404,45013,401,1723,279
gtaaaaccttcttaaattcagtatt..........tagcaactaactccttgacacacag
6ORUFI11G12510.1.exon613,401,17113,401,1100262
TTGGAGCAGTACCATGAGGCACGGGAGGCTATTCTTTCTGGGCTTCAAGTTGATCCCCTC
AG                                                          
 Intron 6-713,401,10913,401,004106
gtacaactgctgatgcattgcctac..........taacatctgtttgccgcatgtatag
7ORUFI11G12510.1.exon713,401,00313,400,81321191
CCATGTCCTGCAAAGCTGGCTCAGTGATCTGCACAGAAATACAAGTATTGCAGCTCGAGC
AAGACGTCCAACATTAGATAGACCAGATGATTTTGAGTGCACATTATGTTTCAAGCTATT
GTTTGAACCAGTCACCACTCCATGTGGGCACTCATTCTGTCGCTCTTGTTTACATCAATC
AATGGATCATG                                                 
 Intron 7-813,400,81213,400,73281
gtaagcttagggaatattcagactt..........tcacattatgtgctatttcctgtag
8ORUFI11G12510.1.exon813,400,73113,400,6711261
GCAATAAATGTCCCATGTGTCGGACAGTTCTTTTTATTGGTCCAAAAACATATCCTATAA
G                                                           
 Intron 8-913,400,67013,400,58388
gtaatctaagttctttgaaattttg..........atgacaatatgattaaatgcttcag
9ORUFI11G12510.1.exon913,400,58213,400,40520178
TGTAACGCTGAGCAACATAATTCAGAAAAATTTTCCGGAAGAATATGCTGAGAGGAAGTC
AGAACATGAGACTATGACATATGCAGGCGTTGATTTGATGCCTCTCTTTGTTATGGATGT
TGTACTGCCCTGTCAAAAGATGGCACTGAACATATTTGAACCTCGCTACAGGCTCATG  
 Intron 9-1013,400,40413,399,742663
gtacaattgccataaattcagttga..........catttttttttccaatttgaaacag
10ORUFI11G12510.1.exon1013,399,74113,399,7030039
GTAAGGAGGATAATGGAAGGGAATCATCGCATGGGAATG                     
 Intron 10-1113,399,70213,399,60994
gtcagtaactaatctaaaataatca..........attgaatattgctgcaatattgcag
11ORUFI11G12510.1.exon1113,399,60813,399,5470262
GTTGGTATTGATTCTGCTACGGGTACTGTAGCTGACTGTGGTTGTGAGGTGGAAATTCTG
GA                                                          
 Intron 11-1213,399,54613,399,46186
gtaagtttagttgttacttgtttat..........catatatatatatatatatgtgtag
12ORUFI11G12510.1.exon1213,399,46013,399,4242037
GTGTGAGCCACTTCCGGATGGTCGTTTTTATCTAGAG                       
 Intron 12-1313,399,42313,398,959465
gtaaaaccataatatttttgcaaga..........gtgaaaataatactttcagttatag
13ORUFI11G12510.1.exon1313,398,95813,398,9090250
GTGGAAGGTTCACGGCGGTTTCGTATCTTGCGATCATGGGACCAAGATGG          
 Intron 13-1413,398,90813,398,82386
gtgagtgtgtcaattaatctgggaa..........ttactttagtcatttcccttttcag
14ORUFI11G12510.1.exon1413,398,82213,398,7532070
GTATAGGGTTGCTGAAATTGAGTGGCTCCAAGATATTTCATTACCAGACGGATCACAGGA
GAGAAAAGAT                                                  
 Intron 14-1513,398,75213,398,088665
gtaaaatcttgttaacttttcagac..........gatgtaactctttggctcttttcag
15ORUFI11G12510.1.exon1513,398,08713,398,0120176
CTGATGGAAAGGGCTAATGCAGCTTCAGAATTGGCCAGGACATATATAAGGCGAGCTAGA
GAAATCTCAAGGCCTG                                            
 Intron 15-1613,398,01113,397,555457
gtatggatattttcaacacattgtc..........ctttaatatgttttgctgaatgtag
16ORUFI11G12510.1.exon1613,397,55413,397,4841071
CGAGGCGAGCAAGACAGACAGATCTTGAGAGCATGCCTGGACCACAGGATCCTGAAAATT
TTAGTTTTTGG                                                 
 Intron 16-1713,397,48313,397,41173
gtaaggctcattcaactgcttagat..........ctcatcactgtactttttattgcag
17ORUFI11G12510.1.exon1713,397,41013,397,2050-206
CTTGTCAACTTAATAAATTTGAGGCCGTCAGACAGGTTGGATCTATTGCGCCTTAGTGAT
ACTCGAGAGGTATGTTCTAAGCGTAACGTTCTCTTTCTACCTAAGAGATCATGTTATAAC
TATGTGCTACTCTTGCTTCTGCAGAGAATTTCTCGTAGTCTTAGATTGCTGGGTGATGCA
GAACAAAGTTGTCGTGTACAGTAAAA                                  
3' downstream sequence
gatatatttgttgcacgagcataactattgtaacaagtgatttattcatc..........