Oryza rufipogon (OR_W1943) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 7: 359,725-365,429 forward strand.
This transcript has 11 exons, is annotated with 11 domains and features and maps to 45 oligo probes.
This transcript is a product of gene ORUFI07G00530 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........tttattgggccggtatcaaacgaagaaagcccggtccagtggtccactgt
| ||||||
| 1 | ORUFI07G00530.4.exon1 | 359,725 | 359,831 | - | 1 | 107 |
ATACTAGTACAATCCCTCCCCCTCCTCGTTCACGGCGACAACCCCGCCGCCGCCGCCGCC GCCTTTCGAGAGATTCCCCGGCGAGATGGCGCCTCCTCCCCCAAAAG |
| Intron 1-2 | 359,832 | 359,874 | 43 |
gttcgttcatgtatactagcttgttccctcctcctctctccag
| |||
| 2 | ORUFI07G00530.4.exon2 | 359,875 | 360,023 | 1 | 0 | 149 |
TCTCCTCTGACATCGAGGCGATCGCAGAGCTTCCTGGCTTCTACTACGACCCGGACAAGA ACCGCTACTTCCCCATCCGAGGTCCCATCCCCGGCGCCGCCACCCGCCGCCCTGCACTAC CGCCTCCTGCCCAACCCCCGCCGCCCCAG |
| Intron 2-3 | 360,024 | 360,105 | 82 |
gtatgttaactctcaccatcgctcg..........tgatgatgatgatgatgttctgcag
| |||
| 3 | ORUFI07G00530.2.exon3 | 360,106 | 360,252 | 0 | 0 | 147 |
GCTGCAGCAGCTGGATGCAGGAAGACGGCGAGGCAGCCCGAGCTGGTCCACGCCAGGGAG ATGTACGGCGGCGGGGTCATCTTCTCCAACAAGAGGAAGTCCACCTTCATGCGCCAGTGC CAGTACGCCCAGGCGTCTCAACCCATG |
| Intron 3-4 | 360,253 | 360,347 | 95 |
gttgcctttcctttctatctctttg..........tacgctcatcttgttcggttaacag
| |||
| 4 | ORUFI07G00530.2.exon4 | 360,348 | 360,478 | 0 | 2 | 131 |
GTTTGGAAGTACAAGGGCACGGCCTTGGTGGCTGACAAAGCACTCGAAGAATTGTATGTG ACGATTCAGACACCAATTGGACTGAAAGAATCCAAGGTGCTAGTGACCGGAAGCATGAAT GGCATAGTTCG |
| Intron 4-5 | 360,479 | 361,282 | 804 |
gtaaggctctcaattccattcttat..........tttttgttttgaaatcatctggcag
| |||
| 5 | ORUFI07G00530.2.exon5 | 361,283 | 361,516 | 2 | 2 | 234 |
TTTATATGGACTAGGGACTGCTATAGCAAACATTGAGGATGAGATGGAGTTTTTACCTGA ACCTGCTTGGACTCCCTTGGTAAAGCAGAATGCACCAGTGAATTCTGCACTTGCAAGCAT CTGGTCATCTGAAACAGCTTTCTCAAAATTCTTATCAAGTGTAACCTGCATAAAAAAGCT TCAGCATTGTTTCCCTGGAGCTGACAACACCAATTCCTCAAGCCAGCGAGCATT |
| Intron 5-6 | 361,517 | 362,216 | 700 |
gtatccttaatttgctgcttatact..........ttcatctatttctaggtacaaacag
| |||
| 6 | ORUFI07G00530.4.exon6 | 362,217 | 362,307 | 2 | 0 | 91 |
TGGTGCTGCTTTTTTTGATTTGGAAAGAAGAGCATTATCATGGATGTATCACTGCAAGAG TGACATTCTCTCCCAACAATTTATGCAATCG |
| Intron 6-7 | 362,308 | 362,755 | 448 |
gtaataatttagatttaaacatggg..........ccaaatgattttcccatgttttcag
| |||
| 7 | ORUFI07G00530.1.exon8 | 362,756 | 362,911 | 0 | 0 | 156 |
GGAAATGTTGTGCTATGCGGCTTGAGGAATGGGAGCATATTTCCTCTTGATGTACGGCAA AAGCAACATAATCGTCCTACCGAGCTAGCTTCACCTGGTACTGCTAGGAGGACTATTCCC CTGACACCCAGAAGGCATAATCGTTGGAGAAATCAG |
| Intron 7-8 | 362,912 | 363,404 | 493 |
gtgcgcactaagtctagtacatatc..........tttgggaaaaaaaaatgccttgcag
| |||
| 8 | ORUFI07G00530.1.exon9 | 363,405 | 363,457 | 0 | 2 | 53 |
GCTGATAACGCTAAATCTTCAAGAGCTATTTCTATGTCTTCAGCAGTTTGCAG
|
| Intron 8-9 | 363,458 | 363,543 | 86 |
gtagtcaaaaaaattccccttgctg..........tgctaaaattggcatcgttatgcag
| |||
| 9 | ORUFI07G00530.1.exon10 | 363,544 | 363,601 | 2 | 0 | 58 |
CTTGGTGGTTCTCTCATCAGATGAGCACTACTTCTTAGGGAGCTCCATGGATGGATCT
|
| Intron 9-10 | 363,602 | 363,888 | 287 |
gtaagtgcataactgcatactagac..........tgcaattgcttcacttgttgtacag
| |||
| 10 | ORUFI07G00530.1.exon11 | 363,889 | 364,009 | 0 | 1 | 121 |
ATCAAGCTATTCGATCTCCGTCTCATTCAGAAAGGGCCTATACAGTCTTATGCAGGGCAT ATAAATTCACATACTCATTTACCACTTGTTGTCGATCCCTCTGAAACCCTTCTTATGTCA G |
| Intron 10-11 | 364,010 | 364,735 | 726 |
gtaagtcaatccttggttccagata..........ctctgaatatctttacccttgtcag
| |||
| 11 | ORUFI07G00530.1.exon12 | 364,736 | 365,429 | 1 | - | 694 |
GTGGGGAAGACAGAATGGTTCGAATTTGGAGTATAAAAACGGGCGAGCAAATATTTGCAC AGAGTGTGGCTGGTTCACTATTCACGGCACTTTGCTGGCCAGAAAGCGGCTGCGACTTGC ACAATTCTTCGCTGTTCGGTGTAAATCACAGTTGGGGGGCTTGGATGGGATCGCGTGATG GTCTGTTCTATGTGCATGGTACTTAAGCGACTGATGGTACTGACTCAAGCCATGATGGCT CTACTGGTGTTATGTACATAAGCATATAAGGAGCGATGGACTGAGTTCTTTGCTGCTGGA GAGTTGACGCTAACGTTACTGGAGCTGTGTGCACTGATGAGAAGAGTCATCTCAATGTAG CCGATGTTATATAACCATGAGATAGATGTGTGCTCATTTTAACGTTTTTTTCTTTTTAAT CTTATTATGATGATAGATTCTTAGGTCATGGGTGAGAGGTACTGGGAGCTATGTTCAGCA TCATGTATGTGTTGAACCGCTTGTATTTTCGGTTATCCTTACAAGCTAACTATTCGTTGT AACAACCTGTGCATTTCATTTCATATCTCAGTTACCTCGTGCTAGTTGGGTGATGCCTGA CTGACTGACTAGTTGGGTGCTGAAGCTAACGCACCAATCTGTTTCAATCATCAAAATGCT GGGTGACTGTTCTTGGTGTCTGTATGTGTGTGCT |
| 3' downstream sequence |
tttttagaactagtgattatatcaacacataaattaacaagtccacttcc..........
|
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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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