Oryza rufipogon (OR_W1943)
Location
About this transcript

This transcript has 12 exons, is annotated with 11 domains and features and maps to 49 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORUFI07G00530.22118514aa
 
Protein coding
A0A0E0Q374 Ensembl Canonical
-ORUFI07G00530.12130282aa
 
Protein coding
A0A0E0Q373 -
-ORUFI07G00530.32028484aa
 
Protein coding
A0A0E0Q375 -
-ORUFI07G00530.41941455aa
 
Protein coding
A0A0E0Q376 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........tttattgggccggtatcaaacgaagaaagcccggtccagtggtccactgt
1ORUFI07G00530.1.exon1359,725359,831--107
ATACTAGTACAATCCCTCCCCCTCCTCGTTCACGGCGACAACCCCGCCGCCGCCGCCGCC
GCCTTTCGAGAGATTCCCCGGCGAGATGGCGCCTCCTCCCCCAAAAG             
 Intron 1-2359,832359,87443
gttcgttcatgtatactagcttgttccctcctcctctctccag                 
2ORUFI07G00530.1.exon2359,875360,023--149
TCTCCTCTGACATCGAGGCGATCGCAGAGCTTCCTGGCTTCTACTACGACCCGGACAAGA
ACCGCTACTTCCCCATCCGAGGTCCCATCCCCGGCGCCGCCACCCGCCGCCCTGCACTAC
CGCCTCCTGCCCAACCCCCGCCGCCCCAG                               
 Intron 2-3360,024360,10582
gtatgttaactctcaccatcgctcg..........tgatgatgatgatgatgttctgcag
3ORUFI07G00530.1.exon3360,106360,252--147
GCTGCAGCAGCTGGATGCAGGAAGACGGCGAGGCAGCCCGAGCTGGTCCACGCCAGGGAG
ATGTACGGCGGCGGGGTCATCTTCTCCAACAAGAGGAAGTCCACCTTCATGCGCCAGTGC
CAGTACGCCCAGGCGTCTCAACCCATG                                 
 Intron 3-4360,253360,34795
gttgcctttcctttctatctctttg..........tacgctcatcttgttcggttaacag
4ORUFI07G00530.1.exon4360,348360,478--131
GTTTGGAAGTACAAGGGCACGGCCTTGGTGGCTGACAAAGCACTCGAAGAATTGTATGTG
ACGATTCAGACACCAATTGGACTGAAAGAATCCAAGGTGCTAGTGACCGGAAGCATGAAT
GGCATAGTTCG                                                 
 Intron 4-5360,479361,282804
gtaaggctctcaattccattcttat..........tttttgttttgaaatcatctggcag
5ORUFI07G00530.1.exon5361,283361,648-2366
TTTATATGGACTAGGGACTGCTATAGCAAACATTGAGGATGAGATGGAGTTTTTACCTGA
ACCTGCTTGGACTCCCTTGGTAAAGCAGAATGCACCAGTGAATTCTGCACTTGCAAGCAT
CTGGTCATCTGAAACAGCTTTCTCAAAATTCTTATCAAGTGTAACCTGCATAAAAAAGCT
TCAGCATTGTTTCCCTGGAGCTGACAACACCAATTCCTCAAGCCAGCGAGCATTGTATCC
TTAATTTGCTGCTTATACTATGCATATTATTCCTACCATGTTTGCACATGTTGTGTCAAT
GTGCATTTCATTTATTTATTTTTACCTGCAAATCTGCAATTTTGTCGTGAGCTTGCTTTA
CTTGAC                                                      
 Intron 5-6361,649361,807159
atcacaaaacatggtggctactcta..........taccggttgcttcatttaatcgcac
6ORUFI07G00530.1.exon6361,808361,8542147
AATCTGGACAGCTGATTGTAATTCAGATGGCACACAGGCAGTCATAG             
 Intron 6-7361,855362,206352
gtgagttttgagttgggcctataat..........aagttttcacttcatctatttctag
7ORUFI07G00530.1.exon7362,207362,30710101
GTACAAACAGTGGTGCTGCTTTTTTTGATTTGGAAAGAAGAGCATTATCATGGATGTATC
ACTGCAAGAGTGACATTCTCTCCCAACAATTTATGCAATCG                   
 Intron 7-8362,308362,755448
gtaataatttagatttaaacatggg..........ccaaatgattttcccatgttttcag
8ORUFI07G00530.1.exon8362,756362,91100156
GGAAATGTTGTGCTATGCGGCTTGAGGAATGGGAGCATATTTCCTCTTGATGTACGGCAA
AAGCAACATAATCGTCCTACCGAGCTAGCTTCACCTGGTACTGCTAGGAGGACTATTCCC
CTGACACCCAGAAGGCATAATCGTTGGAGAAATCAG                        
 Intron 8-9362,912363,404493
gtgcgcactaagtctagtacatatc..........tttgggaaaaaaaaatgccttgcag
9ORUFI07G00530.1.exon9363,405363,4570253
GCTGATAACGCTAAATCTTCAAGAGCTATTTCTATGTCTTCAGCAGTTTGCAG       
 Intron 9-10363,458363,54386
gtagtcaaaaaaattccccttgctg..........tgctaaaattggcatcgttatgcag
10ORUFI07G00530.1.exon10363,544363,6012058
CTTGGTGGTTCTCTCATCAGATGAGCACTACTTCTTAGGGAGCTCCATGGATGGATCT  
 Intron 10-11363,602363,888287
gtaagtgcataactgcatactagac..........tgcaattgcttcacttgttgtacag
11ORUFI07G00530.1.exon11363,889364,00901121
ATCAAGCTATTCGATCTCCGTCTCATTCAGAAAGGGCCTATACAGTCTTATGCAGGGCAT
ATAAATTCACATACTCATTTACCACTTGTTGTCGATCCCTCTGAAACCCTTCTTATGTCA
G                                                           
 Intron 11-12364,010364,735726
gtaagtcaatccttggttccagata..........ctctgaatatctttacccttgtcag
12ORUFI07G00530.1.exon12364,736365,4291-694
GTGGGGAAGACAGAATGGTTCGAATTTGGAGTATAAAAACGGGCGAGCAAATATTTGCAC
AGAGTGTGGCTGGTTCACTATTCACGGCACTTTGCTGGCCAGAAAGCGGCTGCGACTTGC
ACAATTCTTCGCTGTTCGGTGTAAATCACAGTTGGGGGGCTTGGATGGGATCGCGTGATG
GTCTGTTCTATGTGCATGGTACTTAAGCGACTGATGGTACTGACTCAAGCCATGATGGCT
CTACTGGTGTTATGTACATAAGCATATAAGGAGCGATGGACTGAGTTCTTTGCTGCTGGA
GAGTTGACGCTAACGTTACTGGAGCTGTGTGCACTGATGAGAAGAGTCATCTCAATGTAG
CCGATGTTATATAACCATGAGATAGATGTGTGCTCATTTTAACGTTTTTTTCTTTTTAAT
CTTATTATGATGATAGATTCTTAGGTCATGGGTGAGAGGTACTGGGAGCTATGTTCAGCA
TCATGTATGTGTTGAACCGCTTGTATTTTCGGTTATCCTTACAAGCTAACTATTCGTTGT
AACAACCTGTGCATTTCATTTCATATCTCAGTTACCTCGTGCTAGTTGGGTGATGCCTGA
CTGACTGACTAGTTGGGTGCTGAAGCTAACGCACCAATCTGTTTCAATCATCAAAATGCT
GGGTGACTGTTCTTGGTGTCTGTATGTGTGTGCT                          
3' downstream sequence
tttttagaactagtgattatatcaacacataaattaacaagtccacttcc..........