5' upstream sequence
{"provisional":{"flourishes":{},"seq":[{"style":[1]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#008000"]]},"legend":{"exons/Introns":{"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null}},"_messages":[]}},"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only"}
..........ccacctcccccctccacctcgacctcgatctcccctcccctccgctggcc
1 ORUFI03G27810.1.exon1 22,819,465 22,819,078 0 1 388
{"provisional":{"seq":[{"style":[1]},-5,{"style":[1,-27,0]}],"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null},"exon1":{"default":null,"label":"#1044ee","class":"e1","text":"Translated sequence"}},"_messages":[]}},"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only"}
ATGCAGCCCGCCCCCGCGTCGCCGCCCAAGGCCGACGGCGGCGAGGACGAGGAGGAGGAG TGCTCCAGGGCCGTGGTGAAGGAGGAGCCGCACCACCAGCAGGAGGAGGACGACGACGAT GCGGCTGCGGCTGCGGATGGAGGGGAGGATGAGAAGGAGAAAGTGGAGGAGGAGGAGGTG GAGGAGCGGGGGAGGAGGAGGAGGGGCAGGCCGGGGAGGAAGAGGGGGAGGCGAAGCGGC GGCGGCGGTGGTTCGGCTGCGGCTGCGGCGGCGGCGAGAGGAGGGGTGGTGATGGTGAAG CGGGAGCTGCTCGCGAGGTGCATGACGTGCCCGCTCTGCGGCCGCCTCCTCCGCGACGCC ACCACCGTCTCCGAGTGCCTCCACACCT
Intron 1-2 22,819,077 22,817,804 1,274
{"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only","provisional":{"expect":[],"seq":[{"style":[1]}],"flourishes":{},"legend":{"exons/Introns":{"intron":{"default":null,"label":"#aaaaaa","class":"ei","text":"Intron sequence"},"exon1":{"class":"e1","text":"Translated sequence","label":"#1044ee","default":null},"flanking":{"label":"#008000","default":null,"class":"ef","text":"Flanking sequence"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}}}
gtcagttcctcctcctcctccctcc..........ctctaattttttcaccctgatgcag
2 ORUFI03G27810.1.exon2 22,817,803 22,817,704 1 2 100
{"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only","provisional":{"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","class":"ei","default":null,"label":"#aaaaaa"},"exon1":{"default":null,"label":"#1044ee","text":"Translated sequence","class":"e1"},"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"flourishes":{},"seq":[{"style":[1]},{"style":[1,-39,0]}]}}
TTTGCAGAAAGTGTATATATGAGAAGTTGAATGATGAGGAGGTAGAATCCTGCCCAGTAT GTAAAATTGATCTTGGCTGCACTCCAGTTGAAAAGCTTAG
Intron 2-3 22,817,703 22,816,858 846
{"provisional":{"legend":{"exons/Introns":{"intron":{"default":null,"label":"#aaaaaa","class":"ei","text":"Intron sequence"},"exon1":{"default":null,"label":"#1044ee","class":"e1","text":"Translated sequence"},"flanking":{"text":"Flanking sequence","class":"ef","default":null,"label":"#008000"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"seq":[{"style":[1]}],"flourishes":{}},"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only"}
gtatgcttatcatcatgtatatgca..........tcatttctttatgttccaacttcag
3 ORUFI03G27810.1.exon3 22,816,857 22,816,527 2 0 331
{"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only","provisional":{"expect":[],"flourishes":{},"seq":[{"style":[1]},-4,{"style":[1,-30,0]}],"legend":{"exons/Introns":{"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"exon1":{"text":"Translated sequence","class":"e1","default":null,"label":"#1044ee"},"flanking":{"text":"Flanking sequence","class":"ef","default":null,"label":"#008000"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"]]}}}
GGCTGATCACAATCTACAAGATGTAAGGTCAAAAATATTTCCATTCAAAAGAAAGAAGAT TAGTGCTGACGAAGTAGCAGCTCCTGTTTTACTTCCCAGTAAAAGGAAAGAGAGATCTAT CTCTTCTCTGGTAGTTGATACGCCTACAGTAACACCGACAGGCTTGACAGGGCGACGGAC AAGAGCAGTTACCAGGAAAGCTGCTGCCTTGCGTGGCCTTGGTCCTGGTATTGATGATCC TGTGAAAAAGGAAATTGATAATGGTGAAAAGCATGCTCAGAATTCAAGCTTGCCCACTAA TTTGGGCAAAGTGCCACAAACAAGAAGACAG
Intron 3-4 22,816,526 22,816,368 159
{"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only","provisional":{"flourishes":{},"seq":[{"style":[1]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","class":"ei","default":null,"label":"#aaaaaa"},"exon1":{"label":"#1044ee","default":null,"text":"Translated sequence","class":"e1"},"flanking":{"label":"#008000","default":null,"text":"Flanking sequence","class":"ef"}},"_messages":[]}}}
gtaaacagaccacaccttatggggt..........caaaaattgatcctgttgtatgcag
4 ORUFI03G27810.1.exon4 22,816,367 22,815,952 0 2 416
{"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"intron":{"class":"ei","text":"Intron sequence","default":null,"label":"#aaaaaa"},"exon1":{"label":"#1044ee","default":null,"text":"Translated sequence","class":"e1"},"flanking":{"class":"ef","text":"Flanking sequence","default":null,"label":"#008000"}},"_messages":[]},"seq":[{"style":[1]},-5,{"style":[1,-55,0]}],"flourishes":{},"expect":[]}}
ATGTCATCAAACGCAGAGGCATCGAACCATTCCTCCAATAAAGATACCGAAGGTGATCGC AAGGACCTGGCCGATAAGACTGATGAGCTCTGGAGACCTTTAAATTGTTTGGTAGAAGCT GCAAACAGGACAAAGTCCTCCCGATCAAGTTCACAGAGTCCATTTGTTAAGAGAGAGCAA CTTAGTGACTCTCCTGGGAGCACATCTGTTAACAAAACAAAGTCTAGGGAATATATGCAG AAATCCAAAATAGAGGATGATAAGAAAGATGTACCTTTGCTAAAAAGGAAAAACCAAAGG ACTGGACGGAGGAGAGAACTTCATGCCCAATCTGATAGTAAGCCTGAAGCTGCAGCTACA CAAAACGAAAAGAAATTCAGTTCTATATGGTTTTCACTTGTTGCATCATTTGAACA
Intron 4-5 22,815,951 22,815,837 115
{"provisional":{"flourishes":{},"seq":[{"style":[1]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"exons/Introns":{"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"exon1":{"text":"Translated sequence","class":"e1","default":null,"label":"#1044ee"},"flanking":{"label":"#008000","default":null,"text":"Flanking sequence","class":"ef"}},"_messages":[]}},"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only"}
gtaagaattggcgattcatcgtaat..........ccttttttttcctgattattttcag
5 ORUFI03G27810.1.exon5 22,815,836 22,815,786 2 2 51
{"provisional":{"expect":[],"seq":[{"style":[1,-50,0]}],"flourishes":{},"legend":{"exons/Introns":{"intron":{"default":null,"label":"#aaaaaa","class":"ei","text":"Intron sequence"},"exon1":{"text":"Translated sequence","class":"e1","default":null,"label":"#1044ee"},"flanking":{"text":"Flanking sequence","class":"ef","label":"#008000","default":null}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"]]}},"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only"}
GGAAGGAGACCCACCTTTACCACAGATACCTTCCCATTATTTGCGAATAAA
Intron 5-6 22,815,785 22,815,092 694
{"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only","provisional":{"expect":[],"flourishes":{},"seq":[{"style":[1]}],"legend":{"exons/Introns":{"intron":{"default":null,"label":"#aaaaaa","text":"Intron sequence","class":"ei"},"exon1":{"label":"#1044ee","default":null,"text":"Translated sequence","class":"e1"},"flanking":{"text":"Flanking sequence","class":"ef","default":null,"label":"#008000"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}}}
gtgagctcccatctttcccagcgtt..........tattccacactgtgttttacaatag
6 ORUFI03G27810.1.exon6 22,815,091 22,815,019 2 0 73
{"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","class":"ei","default":null,"label":"#aaaaaa"},"exon1":{"label":"#1044ee","default":null,"class":"e1","text":"Translated sequence"},"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null}},"_messages":[]},"flourishes":{},"seq":[{"style":[1]},{"style":[1,-12,0]}],"expect":[]}}
AGATGGAAACATACCTGCCTCGTCAATCCAGAAGTACCTCATGCAGAAGCTTGGCCTTCC TAACGAGGCAGAG
Intron 6-7 22,815,018 22,814,011 1,008
{"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"exons/Introns":{"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"exon1":{"default":null,"label":"#1044ee","text":"Translated sequence","class":"e1"},"flanking":{"label":"#008000","default":null,"text":"Flanking sequence","class":"ef"}},"_messages":[]},"seq":[{"style":[1]}],"flourishes":{},"expect":[]}}
gtaagagctatatctgcctcgcatt..........aatatcgacttgtctggatttacag
7 ORUFI03G27810.1.exon7 22,814,010 22,813,837 0 0 174
{"provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","class":"ei","default":null,"label":"#aaaaaa"},"exon1":{"text":"Translated sequence","class":"e1","default":null,"label":"#1044ee"},"flanking":{"text":"Flanking sequence","class":"ef","default":null,"label":"#008000"}},"_messages":[]},"seq":[{"style":[1]},-1,{"style":[1,-53,0]}],"flourishes":{},"expect":[]},"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only"}
GTCGAAATAAATTGCTGCGGGCAGCCAGTGAACCCTACACAACCCCTGTGCAATTTAGTA GAGGTGTGGTTGAGGGGGCGATCAACACAGACAACACAGACCATGATAGGCTCCCCTGCC AAGGAGTTTGTAATGGTGCTAACTTATGGGCGGCCAAAGGCCATCACGCCATGA
3' downstream sequence
{"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI03G27810;r=30X0P+022813837-22819465;t=ORUFI03G27810.1;db=core;time=1749416334008.008;adorn=only","provisional":{"flourishes":{},"seq":[{"style":[1]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#008000"]]},"legend":{"exons/Introns":{"intron":{"default":null,"label":"#aaaaaa","class":"ei","text":"Intron sequence"},"exon1":{"default":null,"label":"#1044ee","class":"e1","text":"Translated sequence"},"flanking":{"label":"#008000","default":null,"class":"ef","text":"Flanking sequence"}},"_messages":[]}}}
atggcaccacaaacacaaggctcaagccatttttcgcctagaggcgggtc..........
Oryza rufipogon (OR_W1943) ▼ 
Summary
Sequence![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
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