Oryza rufipogon (OR_W1943)
Location
About this transcript

This transcript has 2 exons, is annotated with 16 domains and features and maps to 42 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORUFI01G40820.21011336aa
 
Protein coding
A0A0E0N518 Ensembl Canonical
-ORUFI01G40820.1873290aa
 
Protein coding
A0A0E0N517 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........agaagagaagaggggggaatcgccggagggttcgagaagattctagaggg
1ORUFI01G40820.1.exon133,739,03433,738,76200273
ATGGAGGAGGCGGCGGCGGCGAGCAACGGGGGGCTGCTGTACCACGAGGTGCAGGAGGGG
AAGCTCTGCGCCGTGCACTGCGTGAACACCACCCTGCAGGGGCCCTTCTTCTCCGAGTTC
GACCTCTCCGCGCTCGCCGTCGACCTCGACCAGCGGGAGCGCCAGGTCATGTCCGAGGGC
GCGGCCGGCGCCGCCACCACCGCCGCGGGGGACTTCCTCGCCGAGGGTGAGGGCTCCCAC
AACGTCTCCCTTGGAGGAGACTTCAGCATCCAG                           
 Intron 1-233,738,76133,735,6703,092
gttggcttgccccgtctatggccct..........ctatgcttttcatcttactctatag
2ORUFI01G40820.2.exon233,735,66933,734,93200738
GTTCTGCAGAAGGCACTTGAAGTTTGGGATCTGCAAGTTATCCCCCTTGACTCCCCAGAT
GCGGGGTCATGCCTATTTGACCCTGAGCTGGAAACTGCTTTCATTTGCCATCTGCAGGAC
CACTGGTTCTGCATTAGGAAGGTAAATGGAGAGTGGTACAACTTCAATAGTCTGTACCCT
GCTCCTGAGCATCTATCAAAGTTTTACCTATCAGCTTTCATCGACACCCTGAAGGGGTCA
GGCTGGAGTATCTTTGCAGTGAGGGGCAATTTTCCTAAGGAGTGTCCCATGGCAACGGAA
GGCTCTAATGGTTTCGGGCAGTGGCTGACTCCTGATGATGCCCGGAGGATAACCTCCTCT
TGTAACCAGGTCCAAACACCTACTCAGCAGGCAGGCGTCTCTCTAGTTGCTGATCAATCA
GAGGAAATGAGTGAAATGGATATGATTGCCGCACAGCAGGAAGAAGCTGACTTAAATGCT
GCTATAGCTGCTAGCCTGATGGACACTGGGGGTCCATTTGCTAATTATGCAGCTCACGAA
GAAAGCAGGTCTCAGGATGCTTTTGCAATTGAATCAACATCAGGTGAAATGAGCAAAGAC
GGCAATCTGGAGGAGCAAGGGGCTAACAAATCTGAAACAAGCGAGCCTAACAGCGATAAT
ATTGAGTCTGCTTCAGGCAGTAACCCGAAGCAGAACACTCCCTCTTTAGAGGGAAAAGAA
TCTATAAAAGAAGATTAG                                          
3' downstream sequence
gacggcatgattcgggatggaactgtattagaatatacagacaacaaaaa..........