5' upstream sequence
{"provisional":{"expect":[],"seq":[{"style":[1]}],"legend":{"_messages":[],"exons/Introns":{"flanking":{"class":"ef","default":null,"label":"#008000","text":"Flanking sequence"}}},"ref":{"style":[[0,""],[0,"color:#008000"]]},"flourishes":{}},"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI01G30960;r=10X0P+026640346-26642458;t=ORUFI01G30960.1;db=core;time=1750628182526.526;adorn=only"}
..........ctcccctcccacccattttatcccttgacgctcaaatcagccgcgccccc
1 ORUFI01G30960.1.exon1 26,640,346 26,640,788 - 2 443
{"provisional":{"legend":{"_messages":[],"exons/Introns":{"exon1":{"class":"e1","default":null,"label":"#1044ee","text":"Translated sequence"},"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"flanking":{"class":"ef","label":"#008000","default":null,"text":"Flanking sequence"}}},"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"seq":[{"style":[2,-29,1]},{"style":[1]},-5,{"style":[1,-22,0]}],"expect":[]},"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI01G30960;r=10X0P+026640346-26642458;t=ORUFI01G30960.1;db=core;time=1750628182526.526;adorn=only"}
AATGCCCCTCCCCCTTGACCGGCCACCACAATGCGGCCGCCCTCGTCGTCGGCGACGCCC GGGACGGGCCGGGTGTCGGCGTTCACGATGCGCGCGGTGGCGCGCATGTCGAGGGCGCGG TGGTTCATCTTCCTGAGGCGGGTGTACCAGTACCAGAACGGCCCGAGGTCCGACCTGGGC TCCAACCCCTTCAACTCGCCCGGCTGGCTCGCCCTCGAGCTCGGCGTGATCATGGCGCAG ATGGTCGTCACCACCGCCGTCGTCGCCACCTCCCCCAAGGAGCGCCCCGCGTGGCCGCTC CGGGTTTGGGTCGCCGCCTACAACGTGGGCAACGTGCTCAGCCTCCCCCTCCTCTACTGG CGCCACCGGCATTCCTCCTCCGGCGCCCGCGGCGGCACGCTCTCCGACGATCCCGAGATG CACGGCGCCAACGACCCTCTAAG
Intron 1-2 26,640,789 26,640,863 75
{"provisional":{"expect":[],"seq":[{"style":[1]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"intron":{"class":"ei","text":"Intron sequence","default":null,"label":"#aaaaaa"},"flanking":{"label":"#008000","default":null,"text":"Flanking sequence","class":"ef"},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"}}},"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}},"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI01G30960;r=10X0P+026640346-26642458;t=ORUFI01G30960.1;db=core;time=1750628182526.526;adorn=only"}
gttcataaaacggcattagctgatt..........ttgaaattgtgtgtgtgggatgcag
2 ORUFI01G30960.1.exon2 26,640,864 26,641,221 2 0 358
{"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI01G30960;r=10X0P+026640346-26642458;t=ORUFI01G30960.1;db=core;time=1750628182526.526;adorn=only","provisional":{"expect":[],"seq":[{"style":[1]},-4,{"style":[1,-57,0]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","default":null,"text":"UTR","class":"eu"},"intron":{"class":"ei","text":"Intron sequence","default":null,"label":"#aaaaaa"},"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null},"exon1":{"class":"e1","text":"Translated sequence","label":"#1044ee","default":null}}},"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]}}}
GAACAGGTCGTATCTGATGAACAAGGCACGGGCGTTCCTGGAGCTGTTCTTCGCGATGTG GTTCGTGATGGGCAACGTGTGGGTGTTCGACGCGCGGCTCGGGTCGTTCCACCGCGCGCC GAGGCTGTACGCGCTCTGCATCGGCCTCCTCGCATGGAACGCCGTCGTCTACTCGCTCCC ATTCCTCCTCTTCCTCCTGCTCTGCTGCTTCGTCCCGGCCGTCGGCTACGCGCTCGGGTA CAACATGAACTCCGCGTCCGTCGGCCGGGGCGCCTCCGACGAGCAGCTCGCCGCGCTGCC GCAGTGGCGGTTCAAGGAGCCGGCCGACGCGCCGAGAGACCGCGACCACGACGATCAG
Intron 2-3 26,641,222 26,641,813 592
{"provisional":{"legend":{"_messages":[],"exons/Introns":{"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"flanking":{"class":"ef","default":null,"label":"#008000","text":"Flanking sequence"},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"}}},"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"seq":[{"style":[1]}]},"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI01G30960;r=10X0P+026640346-26642458;t=ORUFI01G30960.1;db=core;time=1750628182526.526;adorn=only"}
gtgagcgcacgttccgttgccgcgt..........catacttactggaattaaatggcag
3 ORUFI01G30960.1.exon3 26,641,814 26,642,458 0 - 645
{"provisional":{"legend":{"_messages":[],"exons/Introns":{"utr":{"text":"UTR","default":null,"label":"#cd6839","class":"eu"},"intron":{"text":"Intron sequence","default":null,"label":"#aaaaaa","class":"ei"},"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"},"exon1":{"default":null,"label":"#1044ee","text":"Translated sequence","class":"e1"}}},"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"expect":[],"seq":[{"style":[1]},-1,{"style":[1,-23,2]},{"style":[2]},-6,{"style":[2,-44,0]}]},"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI01G30960;r=10X0P+026640346-26642458;t=ORUFI01G30960.1;db=core;time=1750628182526.526;adorn=only"}
GAGTGCTGCATATGCCTGGCTCAGTACAAGGAGAAGGAGGAGGTGAGGCAGCTGCCGTGC ACGCACATGTTCCACCTGAAATGCGTGGACAGGTGGCTCAGGATCATCTCCTCTTGCCCT CTCTGCAAGCAAGAGCTCAGCTAGAAAAACAAGCTGACATGAATACGGAGCTACTGATAC CGCGCCTTCCGACGCATGCGTCGCACCTCACGGAAGAAGAAAAAGAAAAGAAAAAAAAAC CCTGGCACGCCAACCATGCGTGCACTGACCTAGTTCGATATTGCTGATGACGGCACGATG AATATTTATGCATACACTTGCATGTGAAAAAGATAGGCTTGGATTAATTAGGCTAGGTAG ACAAGCGGGAAATGTGTAAAAGAGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTTTG CGGTGTTGTTGCATCTCTCGAATGTGGTCGATCGAGATGCGCGTGTACGTAGTTTTTTTC AGCAGAAACCAAACGAGAACATATACCAGGGTTTGCGCTCGTGCTCCAGCGAATGCCAAC CCAAAGGTATTCGGCCCGGTCGAAACTACTACAGTACAGTATTCTAGGCCTGGCTCAGAG TGGGCCAACATTTTCGGCCCAGTTTATTGACCTACTGCCCAGCCT
3' downstream sequence
{"provisional":{"expect":[],"seq":[{"style":[1]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"text":"UTR","default":null,"label":"#cd6839","class":"eu"},"intron":{"default":null,"label":"#aaaaaa","text":"Intron sequence","class":"ei"},"flanking":{"text":"Flanking sequence","label":"#008000","default":null,"class":"ef"},"exon1":{"label":"#1044ee","default":null,"text":"Translated sequence","class":"e1"}}},"flourishes":{},"ref":{"style":[[0,""],[0,"color:#008000"]]}},"url":"/Oryza_rufipogon/Component/Transcript/Exons/exons?g=ORUFI01G30960;r=10X0P+026640346-26642458;t=ORUFI01G30960.1;db=core;time=1750628182526.526;adorn=only"}
ataattatcaatcagcccacctcgtcgctgcgccctgcgggagacggcgg..........
Oryza rufipogon (OR_W1943) ▼ 
Summary
Sequence![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
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