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    Oryza rufipogon (OR_W1943) ▼

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    Transcript: ORUFI05G24410.1

    Location

    Chromosome 5: 22,654,008-22,658,184 reverse strand.

    About this transcript

    This transcript has 6 exons, is annotated with 35 domains and features and maps to 64 oligo probes.

    Gene

    This transcript is a product of gene ORUFI05G24410 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
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    NameTranscript IDbpProteinBiotypeUniProtFlags
    -ORUFI05G24410.12415804aa
     
    Protein coding
    		A0A0E0PQ18 Ensembl Canonical

    Domains & features

    Domains

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    • Domain source
    • Start
    • End
    • Description
    • Accession
    • InterPro
    Download what you seeDownload whole table
    Domain sourceStartEndDescriptionAccessionInterPro
    CDD326564-cd00200-
    PROSITE profiles373404-PS50294-
    PROSITE profiles417450-PS50294-
    PROSITE profiles459491-PS50294-
    PANTHER402801Periodic tryptophan protein 2PTHR19858IPR027145 [Display all genes with this domain]
    Pfam694799Small-subunit processome, Utp12PF04003IPR007148 [Display all genes with this domain]
    Superfamily30410Soluble quinoprotein glucose/sorbosone dehydrogenaseSSF50952IPR011041 [Display all genes with this domain]
    SMART4381WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    SMART84121WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    SMART131170WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam134168WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    SMART323363WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    SMART366405WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam372404WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles373404WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART410449WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam412449WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles417450WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART453491WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam459491WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles459491WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART514553WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    SMART622653WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    PROSITE patterns436450WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
    Superfamily305651WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
    Gene3D24248WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]
    Gene3D254454WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]
    Gene3D457652WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]

    Other features

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    • Feature type
    • Start
    • End
    Download what you seeDownload whole table
    Feature typeStartEnd
    MobiDBLite223272
    MobiDBLite252272
    Seg3654
    Seg224232
    Seg682693
    Alphafold1804
    Ncoils674694

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