Oryza rufipogon (OR_W1943)
Location
About this transcript

This transcript has 22 exons, is annotated with 35 domains and features and maps to 53 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ORUFI01G27950.143851022aa
 
Protein coding
A0A0E0N056 Ensembl Canonical
-ORUFI01G27950.24313998aa
 
Protein coding
A0A0E0N057 -

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
Gene3D253368-2.30.30.140-
Superfamily256365-SSF63748-
Pfam623735-PF13832-
Gene3D768998-2.170.270.10-
CDD845994-cd10518-
Superfamily849995-SSF82199-
CDD569615ATX3/4/5, PHD domaincd15495IPR042011 [Display all genes with this domain]
PROSITE profiles621736Extended PHD (ePHD) domainPS51805IPR034732 [Display all genes with this domain]
PANTHER91998Histone Modification RegulatorPTHR13793IPR050701 [Display all genes with this domain]
PROSITE profiles3998Histone-lysine N-methyltransferase ATXPS51566IPR025780 [Display all genes with this domain]
PROSITE profiles263335PWWP domainPS50812IPR000313 [Display all genes with this domain]
Pfam264360PWWP domainPF00855IPR000313 [Display all genes with this domain]
PROSITE profiles982998Post-SET domainPS50868IPR003616 [Display all genes with this domain]
PROSITE profiles856973SET domainPS50280IPR001214 [Display all genes with this domain]
SMART856979SET domainSM00317IPR001214 [Display all genes with this domain]
Pfam868972SET domainPF00856IPR001214 [Display all genes with this domain]
Superfamily567632Zinc finger, FYVE/PHD-typeSSF57903IPR011011 [Display all genes with this domain]
PROSITE profiles567618Zinc finger, PHD-fingerPS50016IPR019787 [Display all genes with this domain]
Pfam582616Zinc finger, PHD-fingerPF13831IPR019787 [Display all genes with this domain]
SMART569616Zinc finger, PHD-typeSM00249IPR001965 [Display all genes with this domain]
SMART680736Zinc finger, PHD-typeSM00249IPR001965 [Display all genes with this domain]
PROSITE patterns570615Zinc finger, PHD-type, conserved sitePS01359IPR019786 [Display all genes with this domain]
Gene3D562620Zinc finger, RING/FYVE/PHD-type3.30.40.10IPR013083 [Display all genes with this domain]
Gene3D621738Zinc finger, RING/FYVE/PHD-type3.30.40.10IPR013083 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
MobiDBLite2241
MobiDBLite202255
MobiDBLite208255
Seg2044
Seg7097
Seg118139
Seg208253
Seg285298
Seg541555
Alphafold1998
Ncoils228260