Transcript: OPUNC09G11770.1
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- OPUNC09G11770.1 1197 398aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
A0A0E0M284 A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.html Ensembl Canonical,
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{"url":"/Oryza_punctata/Component/Transcript/Sequence_cDNA/sequence?g=OPUNC09G11770;r=9%3A20791611-20792807;t=OPUNC09G11770.1;db=core;time=1754327355699.699;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"background-color:#fff9af;color:#333333"],[21,"fff;color:#333333"],[-21,"color:#1044ee"],[7,"333333"],[5,"3;background-color:#fff9af"],[23,"fff"]]},"expect":["variants","variants"],"flourishes":{},"seq":[{"style":[4]},-18,{"style":[4,-56,0]},{"style":[2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1]},{"style":[2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5]},{"style":[6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1]},{"style":[6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5]},{"style":[6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1]},-1,{"style":[2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1]},-1,{"style":[6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5]},{"style":[2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5]},{"style":[6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5]},{"style":[2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1]},{"style":[6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5]},{"style":[6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1]},{"style":[6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5]},-1,{"style":[2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5,-2,2,-2,5]},{"style":[6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1,-2,6,-2,1]},{"style":[2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1,-2,2,-2,1]},{"style":[6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,3,0]},{"style":[4]},-18,{"style":[4,-56,0]},{"style":[4]},-18,{"style":[4,-56,0]}],"legend":{"_messages":[],"codons":{"c1":{"config":"c1","default":"#fff9af","text":"Alternating codons","label":null,"class":"c1"},"c0":{"default":"#ffffff","config":"c0","label":null,"text":"Alternating codons","class":"c0"}},"exons":{"exon0":{"config":"exon0","default":null,"class":"e0","label":"#333333","text":"An exon"},"exon1":{"config":"exon1","default":null,"label":"#1044ee","class":"e1","text":"Another exon"}},"other":{"utr":{"text":"UTR","label":null,"class":"cu","config":"utr","default":"#ffdf33"}}}}}
1 ATG GCG CCA GCT CGA GTC CAC AGC AAT GGC CGC CTC CTC ATG CTT CTC CTC CTG CTC GCC 60
1 ATGGCGCCAGCTCGAGTCCACAGCAATGGCCGCCTCCTCATGCTTCTCCTCCTGCTCGCC 60
1 -M--A--P--A--R--V--H--S--N--G--R--L--L--M--L--L--L--L--L--A- 20
61 GTC GCC GTC TTT GCG GCG GCG CAG CCG AGC CAG GAC AAT CCT CCG CCG GGC TAC TAC GCG 120
61 GTCGCCGTCTTTGCGGCGGCGCAGCCGAGCCAGGACAATCCTCCGCCGGGCTACTACGCG 120
21 -V--A--V--F--A--A--A--Q--P--S--Q--D--N--P--P--P--G--Y--Y--A- 40
121 ACC AAC TTC AGC CCG TCC ATG GCC ATC GTC ATC GTC GTC CTC ATC GCC GCC TTC TTC TTC 180
121 ACCAACTTCAGCCCGTCCATGGCCATCGTCATCGTCGTCCTCATCGCCGCCTTCTTCTTC 180
41 -T--N--F--S--P--S--M--A--I--V--I--V--V--L--I--A--A--F--F--F- 60
181 CTC GGC TTC TTC TCC ATC TAC GTC CGC CAC TGC TAC GGT GAC CGT GCC GAC TAC TCG ACC 240
181 CTCGGCTTCTTCTCCATCTACGTCCGCCACTGCTACGGTGACCGTGCCGACTACTCGACC 240
61 -L--G--F--F--S--I--Y--V--R--H--C--Y--G--D--R--A--D--Y--S--T- 80
241 AGT CCG CTG CCC CGG TCC GGC GCC GCG CGG TCG CGG CGG CAG CGC GGG CTC GAC CAG TCC 300
241 AGTCCGCTGCCCCGGTCCGGCGCCGCGCGGTCGCGGCGGCAGCGCGGGCTCGACCAGTCC 300
81 -S--P--L--P--R--S--G--A--A--R--S--R--R--Q--R--G--L--D--Q--S- 100
301 GTC CTC GCG ACG TTC CCG ACC ATG GCG TAC GCC GAC GTG AAG GCG CAC AAG TCT GTC AAG 360
301 GTCCTCGCGACGTTCCCGACCATGGCGTACGCCGACGTGAAGGCGCACAAGTCTGTCAAG 360
101 -V--L--A--T--F--P--T--M--A--Y--A--D--V--K--A--H--K--S--V--K- 120
361 GGC GCG CTC GAG TGC GCC GTC TGT ATC AGC GAG TTC GAC GAC GAC GAG ACG CTG CGG TTG 420
361 GGCGCGCTCGAGTGCGCCGTCTGTATCAGCGAGTTCGACGACGACGAGACGCTGCGGTTG 420
121 -G--A--L--E--C--A--V--C--I--S--E--F--D--D--D--E--T--L--R--L- 140
421 CTG CCC AAG TGC TCC CAC GTC TTC CAC CAG GAC TGC ATC GAC ACG TGG CTC GCG TCG CAC 480
421 CTGCCCAAGTGCTCCCACGTCTTCCACCAGGACTGCATCGACACGTGGCTCGCGTCGCAC 480
141 -L--P--K--C--S--H--V--F--H--Q--D--C--I--D--T--W--L--A--S--H- 160
481 GTC ACC TGC CCG GTC TGC CGC GCC AAC CTC GTG GAC GGC TCG TCT GCG CCG GCG GGC GAT 540
481 GTCACCTGCCCGGTCTGCCGCGCCAACCTCGTGGACGGCTCGTCTGCGCCGGCGGGCGAT 540
161 -V--T--C--P--V--C--R--A--N--L--V--D--G--S--S--A--P--A--G--D- 180
541 GTC GCC GCC GAG CTA CCG ACG CCC GCT CCG CGC CCG GAA GGT GCG CCA CCA TCC GAG GCA 600
541 GTCGCCGCCGAGCTACCGACGCCCGCTCCGCGCCCGGAAGGTGCGCCACCATCCGAGGCA 600
181 -V--A--A--E--L--P--T--P--A--P--R--P--E--G--A--P--P--S--E--A- 200
601 GCA GCG CCA GGG GAG GCG CCG GCG GCG GCG GTG GTG ATC GAC GTG GAG GAG ACC GAG GAA 660
601 GCAGCGCCAGGGGAGGCGCCGGCGGCGGCGGTGGTGATCGACGTGGAGGAGACCGAGGAA 660
201 -A--A--P--G--E--A--P--A--A--A--V--V--I--D--V--E--E--T--E--E- 220
661 GAG AGG ATC ATA AGA GAG GAG GCA GCT GAG CTA ACG CGC ATC GGC AGC CTG AAG CGC GCG 720
661 GAGAGGATCATAAGAGAGGAGGCAGCTGAGCTAACGCGCATCGGCAGCCTGAAGCGCGCG 720
221 -E--R--I--I--R--E--E--A--A--E--L--T--R--I--G--S--L--K--R--A- 240
721 CTG CGT TCG AAG TCC GGC CGC GCG CCC GCC GCG CGT TTC CCG CGT TCA CAC TCG ACG GGG 780
721 CTGCGTTCGAAGTCCGGCCGCGCGCCCGCCGCGCGTTTCCCGCGTTCACACTCGACGGGG 780
241 -L--R--S--K--S--G--R--A--P--A--A--R--F--P--R--S--H--S--T--G- 260
781 CAC TCG CTC TCC GCG GCG GCC AGC GTC GGT GCC GCC GGA GCA GGC GCC GAG AGG TTC ACG 840
781 CACTCGCTCTCCGCGGCGGCCAGCGTCGGTGCCGCCGGAGCAGGCGCCGAGAGGTTCACG 840
261 -H--S--L--S--A--A--A--S--V--G--A--A--G--A--G--A--E--R--F--T- 280
841 CTG CGG CTG CCG GAG CAC GTG CTC CGG CAG GTC ATC GCG GCG GGG CAG CTC CAG CGA ACG 900
841 CTGCGGCTGCCGGAGCACGTGCTCCGGCAGGTCATCGCGGCGGGGCAGCTCCAGCGAACG 900
281 -L--R--L--P--E--H--V--L--R--Q--V--I--A--A--G--Q--L--Q--R--T- 300
901 ACG AGC CTC GTG GCG TTC CGT GCC GGC CGC CAG GGG AGC ACG CGC CGT GGC CTC AGG TCG 960
901 ACGAGCCTCGTGGCGTTCCGTGCCGGCCGCCAGGGGAGCACGCGCCGTGGCCTCAGGTCG 960
301 -T--S--L--V--A--F--R--A--G--R--Q--G--S--T--R--R--G--L--R--S- 320
961 GGC GGC GGC GAA GGC AGC AGC CGA GCC GGG AGG AGC GTC CGG CTC GGG CAG TCC GGA CGG 1020
961 GGCGGCGGCGAAGGCAGCAGCCGAGCCGGGAGGAGCGTCCGGCTCGGGCAGTCCGGACGG 1020
321 -G--G--G--E--G--S--S--R--A--G--R--S--V--R--L--G--Q--S--G--R- 340
1021 TGG CCG TCG TTC CTG GCG CGG ACG TTC TCG GCG AGG CTG CCG GCG TGG GGA TCA AGG TCG 1080
1021 TGGCCGTCGTTCCTGGCGCGGACGTTCTCGGCGAGGCTGCCGGCGTGGGGATCAAGGTCG 1080
341 -W--P--S--F--L--A--R--T--F--S--A--R--L--P--A--W--G--S--R--S- 360
1081 ACG CGG AGG GGT GAG AGC GAC GGG TCC AGC AAG GGC GGC AGG GCT GCC GGC GCC GGC GCC 1140
1081 ACGCGGAGGGGTGAGAGCGACGGGTCCAGCAAGGGCGGCAGGGCTGCCGGCGCCGGCGCC 1140
361 -T--R--R--G--E--S--D--G--S--S--K--G--G--R--A--A--G--A--G--A- 380
1141 GGC GGC AAG TCA GTT GTG TGC GAC GAC CAG GCG TGC GTG GTT GGG CAA CGT GTT TGA 1197
1141 GGCGGCAAGTCAGTTGTGTGCGACGACCAGGCGTGCGTGGTTGGGCAACGTGTTTGA 1197
381 -G--G--K--S--V--V--C--D--D--Q--A--C--V--V--G--Q--R--V--*- 398
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