Transcript: OPUNC04G10670.3
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- OPUNC04G10670.1 2066 492aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
A0A0E0KQM2 A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.html Ensembl Canonical, - OPUNC04G10670.2 2361 478aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
A0A0E0KQM3 - - OPUNC04G10670.4 2229 442aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
A0A0E0KQM5 - - OPUNC04G10670.3 1934 456aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
A0A0E0KQM4 -
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{"provisional":{"legend":{"_messages":[],"other":{"utr":{"text":"UTR","default":"#ffdf33","config":"utr","label":null,"class":"cu"}},"exons":{"exon0":{"label":"#333333","default":null,"config":"exon0","text":"An exon","class":"e0"},"exon1":{"label":"#1044ee","default":null,"config":"exon1","text":"Another exon","class":"e1"}},"codons":{"c1":{"label":null,"config":"c1","default":"#fff9af","text":"Alternating codons","class":"c1"},"c0":{"class":"c0","config":"c0","default":"#ffffff","text":"Alternating codons","label":null}}},"expect":["variants","variants"],"seq":[{"style":[10]},-31,{"style":[10,-13,0]},{"style":[2]},{"style":[11]},-1,{"style":[2,-50,9,-2,3,-2,9]},{"style":[3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5]},{"style":[8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9]},{"style":[8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5]},{"style":[3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9]},{"style":[8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5]},{"style":[3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9]},{"style":[8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9]},{"style":[8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5]},{"style":[3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9]},-2,{"style":[8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5]},-1,{"style":[3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5]},{"style":[8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5]},{"style":[8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-1,6,4,-2,6,-2,4,-2,6,-2,4,-2,6]},{"style":[12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5]},{"style":[3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9]},{"style":[8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-1,6,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13]},{"style":[4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13]},{"style":[12,-2,6,-2,3,8,-1,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,12,-2,6]},{"style":[4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-1,8,9]},{"style":[8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,7]},{"style":[1]},-1,{"style":[7]},-1,{"style":[1]},{"style":[7,-13,10,0]},{"style":[10]},-31,{"style":[10,-13,0]},{"style":[10]},-31,{"style":[10,-13,0]}],"flourishes":{},"ref":{"style":[[0,""],[0,"background-color:#ffdf33;color:#1044ee"],[32,"333333"],[-12,"f9af;color:#1044ee"],[12,"333333"],[-11,"fff;color:#1044ee"],[11,"333333"],[-32,"color:#1044ee;background-color:#ffdf33"],[34,"f9af"],[1,"fff"],[-28,"333333"],[5,"3;background-color:#ffdf33"],[22,"f9af"],[1,"fff"]]}},"url":"/Oryza_punctata/Component/Transcript/Sequence_cDNA/sequence?g=OPUNC04G10670;r=4%3A18803113-18812291;t=OPUNC04G10670.3;db=core;time=1736264395523.523;adorn=only"}
1 AAAAGCCCGTATCGCCATTTTGCCAACATCTGGCCTTCCTTCTCTCCGCCTCGCGCCGCC 60
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61 TGCGCCGATCTCTCCGTCCCGCGGCCACCGCGTGCCGGCGGCGCCGCGCCCCTGCTGCTT 120
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121 CTGCGGCATCCTCGCCGAGTTCCCCCCTCCGCCGCCGCCTCCCGCGCCGATACCCGTCCC 180
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181 GCGGGCACGGTCCTGCGTCGTCTTGCTGCTTCCGCCGCATCCTCCTCGCCG ATG ACA CCA 240
...................................................ATGACACCA 9
...................................................-M--T--P- 3
241 AAA TGG AGT GAA TGC TCT TCA AAT AGT TAT AGA GAA TTA TCT TCA AAG GAA AAT GGA GAA 300
10 AAATGGAGTGAATGCTCTTCAAATAGTTATAGAGAATTATCTTCAAAGGAAAATGGAGAA 69
4 -K--W--S--E--C--S--S--N--S--Y--R--E--L--S--S--K--E--N--G--E- 23
301 GGC AAA TCA TCC ATA ACA GAG GCA GTT GTT TCA TCT ACA AGC TAT TTT GGT TCA CCA GCT 360
70 GGCAAATCATCCATAACAGAGGCAGTTGTTTCATCTACAAGCTATTTTGGTTCACCAGCT 129
24 -G--K--S--S--I--T--E--A--V--V--S--S--T--S--Y--F--G--S--P--A- 43
361 GTC AAC AGA ATG TGT TCC CTA TCT ACA CAA AAG AAG GAT GGG AAT GTC TAT AAA AGG AGG 420
130 GTCAACAGAATGTGTTCCCTATCTACACAAAAGAAGGATGGGAATGTCTATAAAAGGAGG 189
44 -V--N--R--M--C--S--L--S--T--Q--K--K--D--G--N--V--Y--K--R--R- 63
421 AAG ATG GAG AAG GAT TCA ACT TCC CTT ACA GCA AAT GAA GAA TTT ATA GAA ATG ACA GCT 480
190 AAGATGGAGAAGGATTCAACTTCCCTTACAGCAAATGAAGAATTTATAGAAATGACAGCT 249
64 -K--M--E--K--D--S--T--S--L--T--A--N--E--E--F--I--E--M--T--A- 83
481 CAA AAT TGC ACA ACT TCT GAA GAC CAC TCT TCA TTA CTG CTA CCT GTT ACT TCA GAT GCA 540
250 CAAAATTGCACAACTTCTGAAGACCACTCTTCATTACTGCTACCTGTTACTTCAGATGCA 309
84 -Q--N--C--T--T--S--E--D--H--S--S--L--L--L--P--V--T--S--D--A- 103
541 ATG ATT TCA AAT TCA ACG GCA CCT ATC CTT GAA CAT GAT GAG CCT GCT GGA GTT TCG CTG 600
310 ATGATTTCAAATTCAACGGCACCTATCCTTGAACATGATGAGCCTGCTGGAGTTTCGCTG 369
104 -M--I--S--N--S--T--A--P--I--L--E--H--D--E--P--A--G--V--S--L- 123
601 GTG CCA AAT TCT TGT TTG AAT GAT AGA TCT TCA GTA TCT AGT ATG CTT CCA CCA TTC ATG 660
370 GTGCCAAATTCTTGTTTGAATGATAGATCTTCAGTATCTAGTATGCTTCCACCATTCATG 429
124 -V--P--N--S--C--L--N--D--R--S--S--V--S--S--M--L--P--P--F--M- 143
661 TTG TTT GAT AAA AAG GAT GCT ACT GAA TGT TCC TCG TCA AAT ATT GGT TCT ACA GAA CCA 720
430 TTGTTTGATAAAAAGGATGCTACTGAATGTTCCTCGTCAAATATTGGTTCTACAGAACCA 489
144 -L--F--D--K--K--D--A--T--E--C--S--S--S--N--I--G--S--T--E--P- 163
721 ATG GCA GGT TTC ACA TCG GCA AGG GAT CTT TGC ATT GCC ATA CTG AGG GAA GAT GGA CTA 780
490 ATGGCAGGTTTCACATCGGCAAGGGATCTTTGCATTGCCATACTGAGGGAAGATGGACTA 549
164 -M--A--G--F--T--S--A--R--D--L--C--I--A--I--L--R--E--D--G--L- 183
781 ATA ACT GAA TCG CGA ACT AAA ATC ACG ACA GAG GAA TTC ACT GGT TAT GAC GCC AAC TTA 840
550 ATAACTGAATCGCGAACTAAAATCACGACAGAGGAATTCACTGGTTATGACGCCAACTTA 609
184 -I--T--E--S--R--T--K--I--T--T--E--E--F--T--G--Y--D--A--N--L- 203
841 CTG TTC CCA TGC AAT ACT TGC GGG AAA TCA GAC CAT CCA TTA AAG ATG CTT ATA TGT GAT 900
610 CTGTTCCCATGCAATACTTGCGGGAAATCAGACCATCCATTAAAGATGCTTATATGTGAT 669
204 -L--F--P--C--N--T--C--G--K--S--D--H--P--L--K--M--L--I--C--D- 223
901 TCT TGT GAA GCA GCA TTC CAT CTG TCT TGT TGC ATC CCT CGT GTT CAT GAG GTA CCA ACT 960
670 TCTTGTGAAGCAGCATTCCATCTGTCTTGTTGCATCCCTCGTGTTCATGAGGTACCAACT 729
224 -S--C--E--A--A--F--H--L--S--C--C--I--P--R--V--H--E--V--P--T- 243
961 GAT GAA TGG TAT TGT CTG ACA TGC TTC AGG AAG AAA CCA AAG AGT CAG TAT GGC AAG CTG 1020
730 GATGAATGGTATTGTCTGACATGCTTCAGGAAGAAACCAAAGAGTCAGTATGGCAAGCTG 789
244 -D--E--W--Y--C--L--T--C--F--R--K--K--P--K--S--Q--Y--G--K--L- 263
1021 TCA GAG GGA AAG GTC AAA TCT TCA GGG AAT ATT AAC CAA AAG CCT AAT GGC ATG AGT CAT 1080
790 TCAGAGGGAAAGGTCAAATCTTCAGGGAATATTAACCAAAAGCCTAATGGCATGAGTCAT 849
264 -S--E--G--K--V--K--S--S--G--N--I--N--Q--K--P--N--G--M--S--H- 283
1081 ATA GAG TAC ATG TTA AAA GAT ACC AAA CCA TAT GTT ACT GGG GTT CGA ATT GGT ATG GAC 1140
850 ATAGAGTACATGTTAAAAGATACCAAACCATATGTTACTGGGGTTCGAATTGGTATGGAC 909
284 -I--E--Y--M--L--K--D--T--K--P--Y--V--T--G--V--R--I--G--M--D- 303
1141 TTT CAA GCA GAA GTG CCA GAA TGG TCT TGT CCC ACT TCC AG T GCT GAT GTT TAT TGC GAG 1200
910 TTTCAAGCAGAAGTGCCAGAATGGTCTTGTCCCACTTCCAGTGCTGATGTTTATTGCGAG 969
304 -F--Q--A--E--V--P--E--W--S--C--P--T--S--S--A--D--V--Y--C--E- 323
1201 GAA CCC TCT GAA TTT GAT TCT GCT GAC CTC ACT AAA TTG AAC TGG TCA AAA ACT AAT ACA 1260
970 GAACCCTCTGAATTTGATTCTGCTGACCTCACTAAATTGAACTGGTCAAAAACTAATACA 1029
324 -E--P--S--E--F--D--S--A--D--L--T--K--L--N--W--S--K--T--N--T- 343
1261 CAA TAT AGA TCT TCA ATC GGT AAT TGG ATA CAA TGC CGT GAG GTC TTG AGT GAA GGA GAT 1320
1030 CAATATAGATCTTCAATCGGTAATTGGATACAATGCCGTGAGGTCTTGAGTGAAGGAGAT 1089
344 -Q--Y--R--S--S--I--G--N--W--I--Q--C--R--E--V--L--S--E--G--D- 363
1321 TCT GAT AAG CCA GTC ATC TGT GGC AAA TGG AGA AG G GCA CCT CTA TTT GTT GTT CAG TCA 1380
1090 TCTGATAAGCCAGTCATCTGTGGCAAATGGAGAAGGGCACCTCTATTTGTTGTTCAGTCA 1149
364 -S--D--K--P--V--I--C--G--K--W--R--R--A--P--L--F--V--V--Q--S- 383
1381 GAT GAT TGG GAC TGC TCC TGT TGT CTA CCT TGG GAT CCG GCT CAC GCT GAT TGT GCT GTT 1440
1150 GATGATTGGGACTGCTCCTGTTGTCTACCTTGGGATCCGGCTCACGCTGATTGTGCTGTT 1209
384 -D--D--W--D--C--S--C--C--L--P--W--D--P--A--H--A--D--C--A--V- 403
1441 CCG CAG G AA TTG GGT ACG GAT GAA GTT CTA AGG CAG CTG AAG TAT GTG AGG ATG GTG AAG 1500
1210 CCGCAGGAATTGGGTACGGATGAAGTTCTAAGGCAGCTGAAGTATGTGAGGATGGTGAAG 1269
404 -P--Q--E--L--G--T--D--E--V--L--R--Q--L--K--Y--V--R--M--V--K- 423
1501 AAT CGG CTG GTT GAT CGA AAT CAC ACG CCT GCT AAA GTT CCA AGG ATG ATA CAA CA G GCC 1560
1270 AATCGGCTGGTTGATCGAAATCACACGCCTGCTAAAGTTCCAAGGATGATACAACAGGCC 1329
424 -N--R--L--V--D--R--N--H--T--P--A--K--V--P--R--M--I--Q--Q--A- 443
1561 ATA GGG GGA GGC GTA TTT GTA ACG GCA TTT AGT GTT TTG TGA GCATTTCTTTAGTGCTGC 1620
1330 ATAGGGGGAGGCGTATTTGTAACGGCATTTAGTGTTTTGTGA.................. 1371
444 -I--G--G--G--V--F--V--T--A--F--S--V--L--*-.................. 456
1621 TGTTGCCGTCTTGGAAAAGAATGCTGCTTGGTGGTATTCCATTTTGTAATGCCTGGTGTG 1680
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1681 TTTGTAGAAGCAGTAGATATTGAGTTATATGCAGCCCAGAAGATATCTTGCATAGGCTGT 1740
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1741 CAGCCTGTCACCATCTTTGTACAAATGAAAAAACATCGGGGACCTAGTGGTAAGGCCATG 1800
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1801 ATCCGCAGGGGAAGGGATATGATATTTTGAAGTGTTTCTATCGTTCTTTACGTATCTTTC 1860
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1861 AGAATATACTGTACTGATAATTTGGCAACAATGACACTGTTGACTTTTGGATATAGGGTT 1920
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1921 TGTCTGGTTTGCTA 1934
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