Oryza punctata (Oryza_punctata_v1.2) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 8: 7,148,083-7,153,014 forward strand.
This transcript has 5 exons, is annotated with 13 domains and features and maps to 27 oligo probes.
This transcript is a product of gene OPUNC08G06970 Show transcript tableHide transcript table
.
| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........acctcatcattctctctctcgatctcttcttttatttcttcttggccatg
| ||||||
| 1 | OPUNC08G06970.1.exon1 | 7,148,083 | 7,148,260 | - | - | 178 |
GCGGAGGGAGGGAGGAGGAGACGAGGAAGCCAAGCGCACGAGAAATTGAGGGTTTGAGAC CTCCACTCCTCTCTCAGTCTCGCCTCTCTCCAAATCGAGTCGAGTTGTTTGGCTCTCTTT CTCTCTACCTTTCTAGCTGGAGCAGCAGAGGAGGAGGAGGAGGAACAAGATTGGGAGG |
| Intron 1-2 | 7,148,261 | 7,149,967 | 1,707 |
gtattttattttctctctgttttca..........acttgagcttacttccttttttcag
| |||
| 2 | OPUNC08G06970.1.exon2 | 7,149,968 | 7,150,692 | - | 0 | 725 |
TTGAATATATGGATGAAACCATGGGGAGGAGAACAGTTGGTGGCCTTCTATTGACCAAAG GGGGCTCAATCCTTGTATATAGGGAAGATAGCCCGCGCCACAAAGCAACCGCTTGCTGTA CGCGCCTTGGCTGTAGCAGTAAGCTTTTCCGCGACAAAGAGAAGAAAATGTGCAGGCCAA CCAAAGAAGCAGTGATTCCTCAGAGATCACAACTTGTCAGTGGATCCAACAGGAAACCTC AAGGAAGAATGGATTGTGGCAGCAGCAAGAATGCAGCAGGCACCTGTAGCGAAACCGGCA ACAGACCTGGAAGAGAAACTGCTGGACGGGATCTTCTGGACCATTTGAAAGAAAGAGTAA ATGCGTCGAGGAAGCGTTCATTGAGTGAAGGGAATAGCCCATCATCATCAAACACATCTA GTGCAGGTTCCTTGAGTAGTAGTAGTAGTAGATCAATCTCAAGACCATCGCATCGGTCAG TTGCAAGGACAAGGAAGGATGGAGGCACAAATGGAAGCACTGCCAAAATGCGTAGTGATA GTGGTGGAAATTCTGGAGCAAATGTGCATAGGAGAGGTGATTTGAAAGGACCTACCGGTA GGTTTGTTTCTCAAAGCTTGCCGAGACATAGAAGCAGAAATCAAGGAGAACCAGTATCTC ATTTGGAAAACAGTTTGAATGACTCCACTGAATACTGGCGCTTCGGTGTGGATGAAAGTG ATGAG |
| Intron 2-3 | 7,150,693 | 7,150,875 | 183 |
gttcgcctttccattgttactttca..........actttaattttttattgtcttgcag
| |||
| 3 | OPUNC08G06970.1.exon3 | 7,150,876 | 7,150,935 | 0 | 0 | 60 |
GATGCTTCCAGTGATAGGCATAGAGGAATGAGAATGGACATCGACGACATGTCTTATGAG
|
| Intron 3-4 | 7,150,936 | 7,151,072 | 137 |
gtatatctattattcagttctaaga..........taatgttggttatgtggcattctag
| |||
| 4 | OPUNC08G06970.1.exon4 | 7,151,073 | 7,151,219 | 0 | 0 | 147 |
GAATTGCTTGCTCTAGGGGAAATAATTGGTACCGTGAGCACTGGCCTTTCAGAGGATGAA CTGTCAAAGTGTCTGAAGAGAATCCACTATGTGCCCTCAGCTTCAACAAGTCATGAAGAT GGTGACATCAAATGCATCATATGCCAG |
| Intron 4-5 | 7,151,220 | 7,151,657 | 438 |
gtatgtccgtttactagcatttcat..........ccttctattctgcttatcttttcag
| |||
| 5 | OPUNC08G06970.1.exon5 | 7,151,658 | 7,153,014 | 0 | - | 1,357 |
GAGGAATATTTACCTGCAGAGGAGGTGGCCGAGATGGCGTGCAAGCATTACTATCATCTT GCTTGCATCCAACAATGGCTTCGGCAAAAGAATTGGTGCCCCATCTGCAAATTCGTCGGT TCTGCTACGAAACATTAGTGTACTTGAGAATTGAACCAGATGCAGATTCATTTTGTTTAC ATAGATTTCATTATATTCTTTGTTTAGGTTCAACTTGTTGCTTAAATGTCCAGAACTGTT CTTGCTCTTGCTCCACACAATGCAGTGAGGGCAAACAAAGGTAGCAGGAAATAAGTCTAG GTAGAAAAAAATTTTGTTATTGAACAGACAGCCCAATTCTATACAGCAATTTAAAGTCCA AACTATTATTCATTATATCTGGCGATCTCTACTGGAGTCAGAATTCAAGTGTATTGTATA TGCGCACCGTTTGGTTCTCAATTATCAAATACAAATAAAATAGTTGTATTAAAATTCTGA ATTTTTTTTGACAGTAAAACAGTAGGAGAGGCTCATACTGCAGATATATTAACCACATAA TTTAATTACAAGGAAGTTTAAAATTACAGGCTGTCAATCCATGATTGCCAGATGGGTCTT TCATGATCCTTTACCCTATGCAAAAGTAGGGTAAAATGCTCCAAAAAAAGATGTTTCCAG AGCCCAAAAGAAGGTGCTATATTGTTGAAAATCATATCATTCCTTCTTTTCCAAATCTGC CAAAGTGTTGTCGCAATGACTTCTAGGAAGAAGCTATGTTGGAATTTTTTGCTGCAACTA TCATGTTCATAAATTCCATATTTGTTGACCAATGGATTCCCAAGAAACTCCAACATAGTC TGGCAAAATGGCAGGAGAAGAGATGCAGAATGTCTTCCGTATGCATATTGTTACAAATAA CACGGTGTGTACCAGCAGTGTTTTGAAAGTTTTTCCTTTGTAGCATATATTTTGTGTTAA GACGATGCATAAATTCTGAAAAAAAATTACAACATTGGTCTACTAATAAGCATCCACCAT CTTACCAATTTCAAGTCTAGAACTGTAGTACATGAGGAGAAACAAAATAAACAAAATCTG ATGGCTAAAAACATTGGTCCACCGATTTAATGATTATTCATAACAAAGTTAAAAATATAA TCACATCGATGTCTTTTAATGATATGAATGTAATAATGCTATTTTGACATGTTGCTAGTT GATAAGCAGTGAGATTGTTGGGAACATTACTCATAGTCGGATTTTATTTTATCTCAGAAA TTGTAGATCTAATTAGCTAGTATGTTTATCAAAAGCAAGATATAACGATATAATCTATAT TGTCCCTTGCTTATCGCAAATAATTGATATAGTGCAA |
| 3' downstream sequence |
aattatctcgtgcgtaacttctacccactattgatatatattattttgca..........
|
.
Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
.
.
![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
![[twitter logo]](/i/twitter.png "Follow us on Twitter!")
