Oryza punctata (Oryza_punctata_v1.2) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 8: 1,559,843-1,566,134 reverse strand.
This transcript has 8 exons, is annotated with 30 domains and features and maps to 23 oligo probes.
This transcript is a product of gene OPUNC08G01660 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........gcggtggaaaatttcggtccggtcgacgtgtgaggggtttgcgcgcaatg
| ||||||
| 1 | OPUNC08G01660.1.exon1 | 1,566,134 | 1,564,695 | 0 | 0 | 1,440 |
ATGGGGAAGACGCAGAAGTTCTCCAAGGGACACCCGCTTGGCTTCGTGCCGGATTACCGG CACGGCGTGGAGACGGTGGGGGAGTCAAAGGGCTGTATCGGGAGCCCGGAGCGGATTGAT TCGGGGAGCTCGTGTGCTGTGCCTAAGAGGAAATGCGGAATCCTGAAGACAGAGGATGGA GGAGAGCTTCCGGGGTTCAATGTGCCACGGGACGTCTTCATGCTACCGAGGATGTCGTCT TCAGATAAAAAGGACCTCGAGATGAGGCTCCGCAAGGAGCTTGAGCAGGTTAAGGCCCTA CAGAGTAGGCTGTTTTCGAGATCGGCTGCGGTGAGCATGAATGGTGGGGTGGCGTCAGCT TCTGGGGATGTGATTGCAAAGAGAAACGATACGAAGCTTAAACGGAGCAATTCAGTGCAG TCTGGCAGAGGAGGGCCGCCATCAGCAGCCACACCTCTGGTCAGGTCTACAAACTACGCA GAAGCTTTTAAACAATGTGGCAACCTTCTGAAGAACCTCTTCAAGCATCAGTGGGCTGGT CCATTCCTTGTGCCGGTTGATGCTGTAAAGTTGAACATTCCTGATTATTTTGACATAATC AAGAAGCCAATGGATTTGGGTACCATCGAGAAAAAGTTGAATGCAGGCATGTACTCTACA CCTTGGGATTTTGCTGCAGATGTGAGGCTTACCTTTGACAATGCCATGACTTATAACCCA ATCGGTAATGATGTTAATTTAATGGCCAAAACTTTGAAACGTATTTTTGAAACTAGATGG AAGTTTATTGAAAAGAAGCTTCCTTCACTAGATGATAAGCTCTCTGTGAGAAGAGAGCCA TCACAAAAGGGTGCAGTTAAGAAAGATACCATTGAGAAAGATTACCCTTCTGAGAAAAAG CTCTCGACAAAAGGTGTACACAAGAAAGATATGTTTAAGAAAGAGGATGTTCCAACTAAG CCAGTTTTGCAACCAAAGAAGAGAAAAGCTTCTCCCTTGGTTCAGGGTTCTCTTGAAATG CCTGTAGTAGAAGCTGATAAGGTGATTGATGATGCTCAAGTGGTACAGACTTCTAAGGTG ATTGATGATGCCCAAGTGGTACAGGCTTCTAAGGTGATTGATGATGCTCAAGTGGTACAG GCTTCTAAGGTGATTGATGATGCTCAAGTGGTACAGGCTTCTAAGGAGACTATGACGGAC AGACAAAAGTATGAGCTGAGTGTAAGACTTCAATCATATGGTGGGTTGATTCCAAATCAT GTAGTTGATTTCATAAGGAGCCACCTTCCTGATGATAATGAGGGTGATGAAGATGAGTTA GAGCTTGACATGAATGTCCTAAGTGATAGTACATTGTTTGAACTTCAGAAGCTTCTTGAT GACTATGATAGGGTAAATCAGTCAGGAAACCCTACAAAAGATGAGCATCGTGAGGTTGAG |
| Intron 1-2 | 1,564,694 | 1,564,620 | 75 |
gtgggtgctgttgtattatagtcat..........tactatttttcaatctgtttggcag
| |||
| 2 | OPUNC08G01660.1.exon2 | 1,564,619 | 1,564,571 | 0 | 1 | 49 |
TTTGAAAGTGAATATGGGCTTAGCAACTCATCGATGCATCATGAAGAAG
|
| Intron 2-3 | 1,564,570 | 1,564,493 | 78 |
gtgtatatctcattctttgtttctt..........aacttttatatatgcatgtttgtag
| |||
| 3 | OPUNC08G01660.1.exon3 | 1,564,492 | 1,564,337 | 1 | 1 | 156 |
GCAATGAGCTCGTTGAAGAGGATGTTGATATTGGTGGGAATGATCTTCCACCTTTGACGT ATCCTCCTCCAGTATTTGAAAGTGAAACGGCAGAAAGAAGCAGCAAGCATAGCACTTCTA GCAGTTCTAGTAGCGATTCAGAATCATCCTCCAGTG |
| Intron 3-4 | 1,564,336 | 1,561,958 | 2,379 |
gtatgttgtttatgcagtctattat..........ttattttccttgtttacctcttcag
| |||
| 4 | OPUNC08G01660.1.exon4 | 1,561,957 | 1,561,898 | 1 | 1 | 60 |
ATTCAGATTCAAGTAGCTCTTCTGGAAGCGATCTGGATGTAAATGTTCCTCCATCAACAA
|
| Intron 4-5 | 1,561,897 | 1,560,812 | 1,086 |
gtggggtcaaggtgcttatttccaa..........caacgtcttcctcttatgattacag
| |||
| 5 | OPUNC08G01660.1.exon5 | 1,560,811 | 1,560,743 | 1 | 1 | 69 |
ATCTACTGAACTCATCTAATCTACCACAACAAAGTAGTGATCCTGTACCTATTTCTGCTG ACGATGACG |
| Intron 5-6 | 1,560,742 | 1,560,672 | 71 |
gtaagcatggattttcttaatggtc..........atagatttttatctaaatatttcag
| |||
| 6 | OPUNC08G01660.1.exon6 | 1,560,671 | 1,560,562 | 1 | 0 | 110 |
GGGAGAATACCGAGAAACAGGTCCCCCCTGCAAAGCAATACCGAGCTGCTGTTTTGTTAA ACCGCTTTGCTGATACAATTTTTAAGGCTCGTGAGAAAACTCTTGATCAG |
| Intron 6-7 | 1,560,561 | 1,560,473 | 89 |
gtatgtattgaaacttttgattgag..........cttcacatgatattattaatatcag
| |||
| 7 | OPUNC08G01660.1.exon7 | 1,560,472 | 1,560,406 | 0 | 1 | 67 |
GTCGCGAAAAAGGATCCTGAGAAACTTCAACACGACATGGAGGAGCTTGAAAGGTTAAGA AGAGAAG |
| Intron 7-8 | 1,560,405 | 1,560,091 | 315 |
gtgagaagaaattgataactttttg..........accctgcagatggagaaaactgtag
| |||
| 8 | OPUNC08G01660.1.exon8 | 1,560,090 | 1,559,843 | 1 | 0 | 248 |
ACATCAATGAAGGGAACCTCTTTTTGAAAGATCTTGAAATGCTCGGAACTGTTACATCAG GTGAACAGTTTCCCAGCTCGGTTGGTGAGACGAGTCCAACCCATACGCCTGAAGGCCTTG GATTTCAACTAGGTAGCAACCCTTTAGAACAGCTTGGTTTGTATATGAAAAATGATGACG AAGAGGATGAGGAAGGTGAGTCTGCAGATGAACCAACGATTGATGTTGAGGAGGGCGAAA TAGATTGA |
| 3' downstream sequence |
catcttacagaccatttttggatacataaggaggtcaagcatgacagggg..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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