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    Oryza punctata (Oryza_punctata_v1.2) ▼

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    Transcript: OPUNC08G00700.1

    Description

    nucleic acid binding;RNA binding [Source:Projected from Arabidopsis thaliana (AT2G02570) TAIR;Acc:AT2G02570]

    Location

    Chromosome 8: 669,307-673,620 reverse strand.

    About this transcript

    This transcript has 10 exons, is annotated with 20 domains and features and maps to 25 oligo probes.

    Gene

    This transcript is a product of gene OPUNC08G00700 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtFlags
    -OPUNC08G00700.11203400aa
     
    Protein coding
    		A0A0E0LQH7 Ensembl Canonical

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    Markup
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........gagggcatcggcggcgagaagcaggcgaagcgaggcgaggcgaggcagcc
    1OPUNC08G00700.1.exon1673,620673,5550066 
    ATGGAGGATCTGAGCGTGGAGGAGCTCGCCTCCAATCTCTCCACCTACAAGGAGCAGCTC
CGCGAG
     Intron 1-2673,554672,2781,277 
    gtctcgccctaacccctatctatgt..........atgtaatcaaatttgcttactgcag
    2OPUNC08G00700.1.exon2672,277672,14801130 
    GTTAGGAAGATTATCAAGGAGAAAAATGATGATCCTGGAATTTCTGAATACCTTGATATG
GAAAAGGAGCTTCAAGAGGTGAGTATCCTGCATGTTGTATGTTATGCTGTTGTGTGCTTT
GTGTTGGTAG
     Intron 2-3672,147672,07771 
    gtatcaactaattatcagatgccat..........atgacttgatgattttcttcaaaag
    3OPUNC08G00700.1.exon3672,076671,93212145 
    GATATTGCTCTTCTTTACTGTCTGAGCCTATTGCTATCGATCCCTTTTTCTTCTTTGTTA
CAAGGAGCCATGCCCAACAAGATATCATGAAAAAGCAGCTTGCAACATTTTTTGGGGCAT
TTAGGTTTTATTGTAACCTTGAAAG
     Intron 3-4671,931671,806126 
    gtgagaaaggttgaatatgtcaatg..........taccctttatcttgattgattgcag
    4OPUNC08G00700.1.exon4671,805671,69420112 
    GTCTGTGTCTCATGGTAGAGTACCTCCTTCCGATTTTGGGTGTCGATGCTGCTTCTCTAA
GTTTGAATCACTAAATATGGACATATTTAATGATATTGGGAGGTTAGTTGTG
     Intron 4-5671,693671,65638 
    gtaattgtgcttaatgtgtttttctgtaataactgcag
    5OPUNC08G00700.1.exon5671,655671,54800108 
    GTTATCACATTAACAGAAGAGCTTTTGGCAACTGCAAATCAAAGTGGGAATGCCCAGAAT
GATGTAGGTCTATCACCGCCAAATTATTCGGGCAGGCTGCAGTCAGAG
     Intron 5-6671,547671,341207 
    gtagctttcttcattgttatatttc..........tgctaacatacttatctggttctag
    6OPUNC08G00700.1.exon6671,340671,2580283 
    GCACTGGATGACCCTTCGCAATCCCATGAGAAGTTTGCAATTGGGACTAAAGTGCAAGCT
GTGTGGAGTGAAGATGGGGAGTG
     Intron 6-7671,257671,16395 
    gtaggtttcttctaatgcacctatt..........catatttgattagctgaattgttag
    7OPUNC08G00700.1.exon7671,162671,0872076 
    GTACAATGCAACAATTGAAGAACTGACAGAAAATGGCTATTATGTAAGCTTTGAGGGCTG
GGGAAACAAAGAAGAG
     Intron 7-8671,086670,529558 
    gtatgctcgtatttggtgattggat..........acagttaatttgctgcctcatatag
    8OPUNC08G00700.1.exon8670,528670,34300186 
    GTTGACCCTGGTAATGTAAGATCACTTGAGGAAGAAGCCGCCGATGCTTTGCGTCAAGCT
GAAAAGGAAGCTGAAGCTACCAAAATGGCAATAAAGAGGAAAATTGAACAGGCAGCAACA
TCTGACTTTCAGATGCGTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCTGAG
GATGTG
     Intron 8-9670,342669,870473 
    gtaagttaatccttcttttcttcta..........ttctgactgacctttgtatatgcag
    9OPUNC08G00700.1.exon9669,869669,74100129 
    AAAGCCACAAAGCGGAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTTGAGCAGCTA
GAATTTGCACAAAATAAGAGGCAGAATGCATGGCAGCAGTTCCAAACAACCAAAGGGAAA
GCTAAAAAG
     Intron 9-10669,740669,475266 
    gtactctctgccacccaccctaact..........cctgactttggtggttttcattcag
    10OPUNC08G00700.1.exon10669,474669,30700168 
    GTCGGGTTCTTTTCCGGTCGCAAAAAGGAGAGCATCTTCAAGTCACCGGATGATCACAGA
GGTAAGGTCGGTGTCACTGGGAGCGGGAAAGGCCTTACCGAGTTCCAGAGAAGGGAGAAG
CACCTCCATCTCAAGGATGGCTCTTCCGATGCATTGGATGAGGAATAA
    3' downstream sequence 
    accagcttaggcttttagctcgtgagaggtgtatcacaaacaccgccatg..........

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