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    Oryza punctata (Oryza_punctata_v1.2) ▼

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    Transcript: OPUNC07G13350.1

    Location

    Chromosome 7: 19,266,169-19,275,437 reverse strand.

    About this transcript

    This transcript has 13 exons, is annotated with 39 domains and features and maps to 31 oligo probes.

    Gene

    This transcript is a product of gene OPUNC07G13350 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtFlags
    -OPUNC07G13350.11953650aa
     
    Protein coding
    		A0A0E0LKP7 Ensembl Canonical
    -OPUNC07G13350.21626541aa
     
    Protein coding
    		A0A0E0LKP8 -

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    Markup
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........ggaggaggccatagggttgtggagggggacctgtctccgatgcgcgacgc
    1OPUNC07G13350.1.exon119,275,43719,275,21900219 
    ATGGCGGCGGTGAACAGCCTCTACGTCGCCGCGGCATCCACCGCGGCCAGCGCCGCGGCG
CTGCAGTGGTGGGCGGGGTCCCTCCTCGACGGGGATGCCGACGCGGCGGGCGGGGGAGGA
GGGGACTGGCTCGGCACGGTGCTGGGCTCGCACGTGACCGTCGCGCTCCTCGCGAATCTG
GCGGCGCACGTGTTCCTCGTCCTCATCCTCTCCCTCAAG
     Intron 1-219,275,21819,273,9821,237 
    gtgagcgatcggtcgatcgggaatg..........ttaatgttgtttttcttttatgcag
    2OPUNC07G13350.1.exon219,273,98119,273,9040078 
    ACACTATTTTTTGTTCAATTAACCTCTTCCGAGACTAGAAAGTTGTTGGAACACATCATT
AACTATGTGCTTTACAAG
     Intron 2-319,273,90319,273,305599 
    gtaagtgctctatccatctctctct..........gccaatgatctctctcatattgcag
    3OPUNC07G13350.1.exon319,273,30419,273,2180087 
    GGAACTTTTCTCCCACTGGTCGTGCCTCCTAATTCTCAACAAATAATCCTTTGGTCAAGT
TGGTTGTGCCTTCTTTGTTCACTGAAG
     Intron 3-419,273,21719,273,13781 
    gtaacgttttagaacttcaagtctt..........taactaaaatttcttgtacatccag
    4OPUNC07G13350.1.exon419,273,13619,273,01502122 
    ATGTTTCAATCATTGGCTAGAGAACGCCTTGAACAGCTCAATGCTTCACCATCAGCGACT
CCATCAAAATATTTTCGTGTATATTCTGCACTGTTGCTGGTTCTATCGGCTGATCTACTA
TG
     Intron 4-519,273,01419,272,396619 
    gtaatattccctggttagtctgcat..........ttaattaattatctatcttttccag
    5OPUNC07G13350.1.exon519,272,39519,272,2992097 
    GATAAAGCTTTGTGTTGGGTTCTGCAAGTCGTGTAATTCTCAACTATTTTGGCTTCTGTT
TTTTGAGCCACTTAGTATTGGCTTTGAGACACTGCAG
     Intron 5-619,272,29819,272,078221 
    gtacttcaacccagattgtgggaag..........ttctcacatagtattttcctagcag
    6OPUNC07G13350.1.exon619,272,07719,271,97201106 
    TCAATCATGGTGCATGGATTTCAGTTGTTTGACATATGGCAACGACATCAAATGGACAGT
GGTGTGGACTATCTTGATTTCCAAAAAACTTATAAGCAAGCAGCAG
     Intron 6-719,271,97119,271,413559 
    gtgataagctacctgtcttcactgc..........gtccaatcatgctttgtaactgcag
    7OPUNC07G13350.1.exon719,271,41219,271,25510158 
    GATCTTTTTCTGAGTGGAGAGGCAGACTTGTCAGAAATTTTGGTTTTGTCATTGACCTGA
TAAGCTTATTGATGTCACTTGGTCATTATTCAATGATCTTCTGGCTCCGTGGTATGGCGT
TTCATCTGGTTGACGCTGTTCTCCTATTGAACTTGCGC
     Intron 7-819,271,25419,271,16293 
    gtaagtgtgacattcgcttgtcaac..........tggaattctttgaaaatgtttgcag
    8OPUNC07G13350.1.exon819,271,16119,271,02400138 
    GCTCTTATAGCTTCATTTTTGAAGCGGATAAAAACTTACGCCAAGTTACGAAAGGCACTT
AGTTCACTCGACGGAGCACTTCCAGATGCTACATATGATGAAATCTGTGCATACGACGAT
GAGTGTGCTATCTGCAGG
     Intron 8-919,271,02319,270,191833 
    gtaaatttttatctagattttcaca..........tcttaagtattgttgctatgtgtag
    9OPUNC07G13350.1.exon919,270,19019,270,1200271 
    GTTGGACCAAGGATTAATGGATGGTTACTCATGTCCAACTTGTCGAAGACCTCTCTTTCT
GTCATCCCAAG
     Intron 9-1019,270,11919,270,11010 
    gtcacacaag
    10OPUNC07G13350.1.exon1019,270,10919,269,98122129 
    ATCTACAGCAGCAGAGGCGGGAAACGTCCAGCTTATTGCAGAACAACTTAATGTGGGGTT
GAATCAGCAGAGGGTTCCTGGTCATGAACATCCTATTGAACATCAGAATCCTGCAGATGC
TGTTTGGAG
     Intron 10-1119,269,98019,269,612369 
    gtgtgtataacaagcttgaaattat..........ttctcaatgctagctggatagccag
    11OPUNC07G13350.1.exon1119,269,61119,269,28522327 
    TTGCGACCTTCAGGCAGGTCTAGCTATATATAGAGATGATATGGAAGAGAAGGCAACTAA
TGTGGAGACCAACAGAGCAAAGACAAAGTGGGAGCTTAGAGGAGCAAAAACAGCAGGTGC
CTCTGAGGAGGCTGCTCTGCAGTTTGTGCTAATGAAGAAACAACCAACTGTATCTGTTGC
TTACTCAAGAGTGAGTATGCCGTGCTATGACCTCTTGGTTTACCAGTTTCTTGCCTTATG
CTCTACGTGTTCCGTAAGCGCTTCCTGCATGTGTTTCTACAACAAGAAGAGTACGGGAAT
GAACAAAAATATACAAGAAAAGAAAAG
     Intron 11-1219,269,28419,266,6762,609 
    gttagaaaaactgtacattggagcc..........gatgcataggtgttgggtggtgcag
    12OPUNC07G13350.1.exon1219,266,67519,266,31520361 
    AGGTGCTGGTCTTGATTCTAGCTGGGCACCACCATGGTCGAGCCCTGGGATGGACAATCC
CAGTTCTTCCAGCGCCGTGACATCAGTGGGGCTTAGTGGAGTTCAGATGATGATGAGGCA
GTTGACCTCTGTGACTGATAATTACGGGCATTCAGATGCCACCTGGAGTCTATGGCCTGA
GCCAGTTGCAGGATCTTCGATCGTTCCATCCTCTTCCTCGAGGCCTGATGGTTCTTCAGC
TGCTGGCTTGCGGTTCCGAGGCACTGCAAGACCTGTGAATGGTAGTATGTCGGAGGTTCT
TTCCATGGTAGATAGAGTACGAGAAGTTTTACCCCATATCCCTGACGAGCTAATTATTGA
G
     Intron 12-1319,266,31419,266,22986 
    gtacacttccatttcctctcaactc..........gatgttttttctcaccaatttgtag
    13OPUNC07G13350.1.exon1319,266,22819,266,1690060 
    GATCTGATGAGAACAAATAATATAAACGCTACTGTAAATAATCTTCTGCTGATGCAATAA
    3' downstream sequence 
    aagataaacctgcaatacaacatataagcacgatgtttaccggctataag..........

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